| commit | author | age | ||
| a6b1b5 | 1 | ####### Vesicle definitions ########### |
| SP | 2 | # nshell is a number of divisions of dipyramid |
| 4a1b27 | 3 | nshell=17 |
| e86357 | 4 | # dmax is the max. bond length (in units l_min) |
| 304510 | 5 | dmax=1.7 |
| ea1cce | 6 | # dmin_interspecies in the min. dist. between different vertex species (in units l_min) |
| fe24d2 | 7 | dmin_interspecies=1.2 |
| e86357 | 8 | # bending rigidity of the membrane (in units kT) |
| 2dcc65 | 9 | xk0=10.0 |
| e86357 | 10 | # max step size (in units l_min) |
| a6b1b5 | 11 | stepsize=0.15 |
| e86357 | 12 | |
| M | 13 | # Pressure calculations |
| 14 | # (pswitch=1: calc. p*dV energy contribution) | |
| 11e87f | 15 | pswitch = 0 |
| 2dcc65 | 16 | # pressure difference: p_inside - p_outside (in units kT/l_min^3): |
| 11e87f | 17 | pressure=0.0 |
| a6b1b5 | 18 | |
| 9166cb | 19 | #Constant volume constraint (0 disable constant volume, 1 enable) |
| 0f9d22 | 20 | constvolswitch=0 |
| dd5aca | 21 | constvolprecision=1e-14 |
| 9166cb | 22 | |
| SP | 23 | |
| 624f81 | 24 | ####### Polymer (brush) definitions ########### |
| a2db52 | 25 | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
| ea1cce | 26 | npoly=0 |
| 48bb92 | 27 | # nmono is a number of monomers in each polymer |
| f8e6ba | 28 | nmono=10 |
| 48bb92 | 29 | # Spring constant between monomers of the polymer |
| M | 30 | k_spring=800 |
| a6b1b5 | 31 | |
| 624f81 | 32 | ####### Filament (inside the vesicle) definitions ########### |
| 58230a | 33 | # nfil is a number of filaments inside the vesicle |
| f06f5f | 34 | nfil=0 |
| 58230a | 35 | # nfono is a number of monomers in each filament |
| 402e8f | 36 | nfono=300 |
| b30f45 | 37 | # Persistence lenght of the filaments (in units l_min) |
| 611412 | 38 | xi=0 |
| 58230a | 39 | |
| M | 40 | ####### Nucleus (inside the vesicle) ########### |
| 41 | # Radius of an impenetrable hard sphere inside the vesicle | |
| f06f5f | 42 | R_nucleus=0 |
| a6b1b5 | 43 | |
| SP | 44 | ####### Cell definitions ############ |
| 45 | nxmax=60 | |
| 46 | nymax=60 | |
| 47 | nzmax=60 | |
| 48 | ||
| 49 | ||
| 50 | ####### Program Control ############ | |
| d7a113 | 51 | #how many MC sweeps between subsequent records of states to disk |
| 49dbdd | 52 | mcsweeps=200 |
| d7a113 | 53 | #how many initial mcsweeps*inititer MC sweeps before recording to disk? |
| 5a3862 | 54 | inititer=0 |
| d7a113 | 55 | #how many records do you want on the disk iteration are there in a run? |
| d27c07 | 56 | iterations=100 |
| d7a113 | 57 | |
| a6b1b5 | 58 | |
| dc77e8 | 59 | ###### Spherical harmonics ########### |
| 5a3862 | 60 | # If 0 then spherical harmonics are not calculated at all. |
| c60a49 | 61 | spherical_harmonics_coefficients=21 |
| dc77e8 | 62 | |
| a6b1b5 | 63 | #shut up if we are using cluster!!! |
| SP | 64 | quiet=false |
| f74313 | 65 | |
| SP | 66 | #what type of multiprocessing? (*none, smp, cluster, distributed, cuda, auto) |
| 67 | #currently only none makes sense. | |
| 68 | multiprocessing=none | |
| 69 | #how many cores are allowed to process in SMP? | |
| 70 | smp_cores=2 | |
| 71 | #how many nodes in cluster? | |
| 72 | cluster_nodes=50 | |
| 73 | #max number of processes in distributed (voluntary) environment | |
| 74 | distributed_processes=50 | |
| 75 | #cuda options??? | |
