| | |
|---|
| | | ####### Vesicle definitions ########### |
|---|
| | | # nshell is a number of divisions of dipyramid |
|---|
| | | nshell=5 |
|---|
| | | nshell=17 |
|---|
| | | # dmax is the max. bond length (in units l_min) |
|---|
| | | dmax=1.7 |
|---|
| | | # dmin_interspecies in the min. dist. between different vertex species (in units l_min) |
|---|
| | |
|---|
| | | |
|---|
| | | # Pressure calculations |
|---|
| | | # (pswitch=1: calc. p*dV energy contribution) |
|---|
| | | pswitch = 0 |
|---|
| | | pswitch = 1 |
|---|
| | | # pressure difference: p_inside - p_outside (in units kT/l_min^3): |
|---|
| | | pressure=0.0 |
|---|
| | | pressure=-10.0 |
|---|
| | | |
|---|
| | | #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol) |
|---|
| | | constvolswitch=2 |
|---|
| | | constvolswitch=0 |
|---|
| | | constvolprecision=1e-14 |
|---|
| | | |
|---|
| | | #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea) |
|---|
| | |
|---|
| | | |
|---|
| | | ####### Polymer (brush) definitions ########### |
|---|
| | | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
|---|
| | | npoly=2 |
|---|
| | | npoly=3 |
|---|
| | | # nmono is a number of monomers in each polymer |
|---|
| | | nmono=10 |
|---|
| | | # Spring constant between monomers of the polymer |
|---|
| | |
|---|
| | | |
|---|
| | | ####### Filament (inside the vesicle) definitions ########### |
|---|
| | | # nfil is a number of filaments inside the vesicle |
|---|
| | | nfil=0 |
|---|
| | | nfil=2 |
|---|
| | | # nfono is a number of monomers in each filament |
|---|
| | | nfono=300 |
|---|
| | | # Persistence lenght of the filaments (in units l_min) |
|---|
| | |
|---|
| | | ####### Nucleus (inside the vesicle) ########### |
|---|
| | | # Radius of an impenetrable hard sphere inside the vesicle |
|---|
| | | R_nucleus=0 |
|---|
| | | |
|---|
| | | R_nucleusX=2.0 |
|---|
| | | R_nucleusY=6.0 |
|---|
| | | R_nucleusZ=2.0 |
|---|
| | | ####### Cell definitions ############ |
|---|
| | | nxmax=60 |
|---|
| | | nymax=60 |
|---|
