From aafd67f2d592799167864698ea07eb8aadcc86a7 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 25 May 2016 18:37:21 +0000
Subject: [PATCH] Merge branch 'master' of bitbucket.org:samop/trisurf-ng with work done on removing the memory leaks.

---
 src/tape |   16 +++++++++-------
 1 files changed, 9 insertions(+), 7 deletions(-)

diff --git a/src/tape b/src/tape
index baaac60..12f88cd 100644
--- a/src/tape
+++ b/src/tape
@@ -1,6 +1,6 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
-nshell=5
+nshell=17
 # dmax is the max. bond length (in units l_min)
 dmax=1.7
 # dmin_interspecies in the min. dist. between different vertex species (in units l_min)
@@ -12,12 +12,12 @@
 
 # Pressure calculations
 # (pswitch=1: calc. p*dV energy contribution)
-pswitch = 0
+pswitch = 1
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
-pressure=0.0
+pressure=-10.0
 
 #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
-constvolswitch=2
+constvolswitch=0
 constvolprecision=1e-14
 
 #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
@@ -25,7 +25,7 @@
 
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=2
+npoly=3
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
@@ -33,7 +33,7 @@
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
-nfil=0
+nfil=2
 # nfono is a number of monomers in each filament
 nfono=300
 # Persistence lenght of the filaments (in units l_min)
@@ -42,7 +42,9 @@
 ####### Nucleus (inside the vesicle) ###########
 # Radius of an impenetrable hard sphere inside the vesicle
 R_nucleus=0
-
+R_nucleusX=2.0
+R_nucleusY=6.0
+R_nucleusZ=2.0
 #######  Cell definitions ############
 nxmax=60
 nymax=60

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