Nucleus translates with the vesicle. Dump and restore includes optional <nu...

Samo Penic

2016-05-31 4891eb093f61d37056c50c572e669349dd49a65a

 src/initial_distribution.c

@@ -1,3 +1,4 @@
/* vim: set ts=4 sts=4 sw=4 noet : */
#include<stdlib.h>
#include<math.h>
#include<stdio.h>
@@ -39,12 +40,21 @@

ts_vesicle *create_vesicle_from_tape(ts_tape *tape){
   ts_vesicle *vesicle;
   ts_vertex *vtx;

   vesicle=initial_distribution_dipyramid(tape->nshell,tape->ncxmax,tape->ncymax,tape->nczmax,tape->stepsize);
   // Nucleus:
   vesicle->R_nucleus=tape->R_nucleus*tape->R_nucleus;
       vesicle->tape=tape;
   set_vesicle_values_from_tape(vesicle);
   return vesicle;
}

ts_bool set_vesicle_values_from_tape(ts_vesicle *vesicle){
   // Nucleus:
   ts_vertex *vtx;
   ts_tape *tape=vesicle->tape;
   vesicle->R_nucleus=tape->R_nucleus*tape->R_nucleus;
   vesicle->R_nucleusX=tape->R_nucleusX*tape->R_nucleusX;
   vesicle->R_nucleusY=tape->R_nucleusY*tape->R_nucleusY;
   vesicle->R_nucleusZ=tape->R_nucleusZ*tape->R_nucleusZ;
   vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies;

   //Initialize grafted polymers (brush):
@@ -85,7 +95,7 @@
   vesicle->dmax=tape->dmax*tape->dmax; /* dmax^2 in the vesicle dmax variable */
   vesicle->bending_rigidity=tape->xk0;
   vtx_set_global_values(vesicle); /* make xk0 default value for every vertex */ 
   ts_fprintf(stdout, "Tape setting: xk0=%e\n",tape->xk0);
//   ts_fprintf(stdout, "Tape setting: xk0=%e\n",tape->xk0);
   vesicle->stepsize=tape->stepsize;
   vesicle->clist->ncmax[0]=tape->ncxmax;
   vesicle->clist->ncmax[1]=tape->ncymax;
@@ -100,7 +110,7 @@
    else {
        vesicle->sphHarmonics=NULL;
    }
    return vesicle;
    return TS_SUCCESS;

}