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| | | /* vim: set ts=4 sts=4 sw=4 noet : */ |
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| | | #include<stdio.h> |
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| | | #include<math.h> |
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| | | #include<stdlib.h> |
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| | | #include "general.h" |
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| | | #include "vertex.h" |
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| | | #include "bond.h" |
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| | | #include "frame.h" |
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| | | #include "timestep.h" |
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| | | #include "poly.h" |
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| | | #include "sh.h" |
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| | | #include "shcomplex.h" |
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| | | #include "dumpstate.h" |
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| | | #include "restore.h" |
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| | | |
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| | | #include <fcntl.h> |
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| | | /** Entrance function to the program |
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| | | * @param argv is a number of parameters used in program call (including the program name |
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| | | * @param argc is a pointer to strings (character arrays) which holds the arguments |
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| | | */ |
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| | | |
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| | | int main(int argv, char *argc[]){ |
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| | | ts_vesicle *vesicle; |
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| | | ts_tape *tape; |
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| | | ts_vesicle *vesicle=NULL; |
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| | | ts_tape *tape=NULL; |
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| | | ts_uint start_iteration=0; |
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| | | force_from_tape=0; |
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| | | /* Area and volume for constant area and constant volume are initialized to be zero */ |
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| | | A0=0; |
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| | | V0=0; |
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| | | /* create lock file */ |
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| | | createPidFile("ts_trisurf",".lock",0); |
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| | | parse_args(argv,argc); // sets global variable command_line_args (defined in io.h) |
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| | | ts_fprintf(stdout,"TRISURF-NG v. %s, compiled on: %s %s.\n", TS_VERSION, __DATE__, __TIME__); |
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| | | ts_fprintf(stdout,"Programming done by: Samo Penic and Miha Fosnaric\n"); |
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| | | ts_fprintf(stdout,"Released under terms of GPLv3\n"); |
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| | | ts_fprintf(stdout,"Starting program...\n\n"); |
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| | | if(command_line_args.force_from_tape){ |
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| | | // vesicle = parseDump("timestep_000000.vtu"); |
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| | | // run_simulation(vesicle, vesicle->tape->mcsweeps, vesicle->tape->inititer, vesicle->tape->iterations, 1); |
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| | | |
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| | | if(command_line_args.dump_from_vtk[0]!=0){ |
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| | | ts_fprintf(stdout,"************************************************\n"); |
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| | | ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n"); |
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| | | ts_fprintf(stdout,"************************************************\n\n"); |
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| | | vesicle = parseDump(command_line_args.dump_from_vtk); |
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| | | // write_vertex_xml_file(vesicle,9999); // here you can test if restoration and rewritting results in the same dump file. Only the date od creation of dump file must differ. |
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| | | tape = vesicle->tape; |
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| | | int arguments_no; |
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| | | FILE *fd=fopen(".status","r"); |
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| | | if(fd!=NULL){ |
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| | | arguments_no=fscanf(fd,"%u", &start_iteration); |
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| | | if(arguments_no==0){ |
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| | | ts_fprintf(stdout,"No information of start iteration in .status file\n"); |
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| | | } |
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| | | fclose(fd); |
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| | | start_iteration++; |
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| | | } |
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| | | else |
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| | | ts_fprintf(stdout,"No .status file. The iteration count will start from 0\n"); |
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| | | } |
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| | | else if(command_line_args.force_from_tape){ |
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| | | ts_fprintf(stdout,"************************************************\n"); |
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| | | ts_fprintf(stdout,"**** Generating initial geometry from tape *****\n"); |
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| | | ts_fprintf(stdout,"************************************************\n\n"); |
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| | | tape=parsetape("tape"); |
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| | | tape=parsetape(command_line_args.tape_fullfilename); |
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| | | vesicle=create_vesicle_from_tape(tape); |
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| | | } else { |
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| | | |
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| | | ts_fprintf(stdout,"**********************************************************************\n"); |
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| | | ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n"); |
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| | | ts_fprintf(stdout,"**********************************************************************\n\n"); |
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| | | tape=parsetape("tape"); |
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| | | vesicle=restore_state(&start_iteration); |
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| | | if(vesicle==NULL){ |
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| | | ts_fprintf(stderr, "Dump file does not exist or is not a regular file! Did you mean to invoke trisurf with --force-from-tape option?\n\n"); |
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| | | return 1; |
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| | | } |
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| | | // nove vrednosti iz tapea... |
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| | | vesicle->bending_rigidity=tape->xk0; |
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| | | vtx_set_global_values(vesicle); |
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| | | vesicle->pswitch =tape->pswitch; |
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| | | vesicle->pressure=tape->pressure; |
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| | | vesicle->dmax=tape->dmax*tape->dmax; |
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| | | poly_assign_filament_xi(vesicle,tape); |
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| | | vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies; |
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| | | |
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| | | if(command_line_args.reset_iteration_count) start_iteration=tape->inititer; |
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| | | else start_iteration++; |
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| | | |
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| | | if(start_iteration>=tape->iterations){ |
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| | | ts_fprintf(stdout, "Simulation already completed. if you want to rerun it try with --force-from-tape or --reset-iteration-count\n\n"); |
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| | | return 0; |
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| | | } |
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| | | ts_fprintf(stderr, "Dump file does not exist or is not a regular file! Did you mean to invoke trisurf with --force-from-tape or --restore-from-vtk option?\n\n"); |
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| | | fatal("Recreating vesicle from binary dump file not supported anymore. Sorry.",254); |
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| | | } |
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| | | |
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| | | run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration); |
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| | | write_master_xml_file("test.pvd"); |
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| | | write_dout_fcompat_file(vesicle,"dout"); |
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| | | vesicle_free(vesicle); |
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| | | tape_free(tape); |
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| | | return 0; //program finished perfectly ok. We return 0. |
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