| commit | author | age | ||
| d7639a | 1 | #ifndef _IO_H |
| SP | 2 | #define _IO_H |
| 3 | ||
| 083e03 | 4 | /** @ Global variables for I/O operations like filenames etc. */ |
| SP | 5 | /*static char mastername[1024]; |
| 6 | static char prefixname[1024]; | |
| 7 | static ts_bool restore=0; | |
| 8 | static char tape[1024]; */ | |
| 9 | int force_from_tape; | |
| 10 | ||
| 8a6614 | 11 | |
| SP | 12 | typedef struct { |
| 13 | long int nshell; | |
| 14 | long int ncxmax; | |
| 15 | long int ncymax; | |
| 16 | long int nczmax; | |
| 17 | long int npoly; | |
| 18 | long int nmono; | |
| 58230a | 19 | long int nfil; |
| M | 20 | long int nfono; |
| 21 | long int R_nucleus; | |
| 8a6614 | 22 | long int pswitch; |
| SP | 23 | char *multiprocessing; |
| 24 | long int brezveze0; | |
| 25 | long int brezveze1; | |
| 26 | long int brezveze2; | |
| 27 | ts_double xk0; | |
| 28 | ts_double dmax; | |
| ea1cce | 29 | ts_double dmin_interspecies; |
| 8a6614 | 30 | ts_double stepsize; |
| SP | 31 | ts_double kspring; |
| b30f45 | 32 | ts_double xi; |
| 8a6614 | 33 | ts_double pressure; |
| SP | 34 | long int iterations; |
| 35 | long int inititer; | |
| 36 | long int mcsweeps; | |
| 37 | long int quiet; | |
| dc77e8 | 38 | long int shc; |
| 8a6614 | 39 | } ts_tape; |
| SP | 40 | |
| 41 | typedef struct{ | |
| 42 | ts_int force_from_tape; | |
| 43 | ts_int reset_iteration_count; | |
| 3f5c83 | 44 | char path[1024]; //path where all files should be added |
| SP | 45 | char output_fullfilename[1024]; //name of the master file |
| 46 | char dump_fullfilename[1024]; //name of the dump file | |
| 47 | char tape_fullfilename[1024]; //name of the tape file | |
| 8a6614 | 48 | } ts_args; |
| SP | 49 | |
| 50 | ts_args command_line_args; | |
| 51 | ||
| 083e03 | 52 | ts_bool parse_args(int argc, char **argv); |
| SP | 53 | |
| 54 | ||
| 55 | ||
| d7639a | 56 | /** @brief Prints the position of vertices for the whole list |
| SP | 57 | * |
| 58 | * The function is meant more or less as a debug tool, but can be used in production | |
| 59 | * environment aswell. | |
| 60 | * the output is in form of idx: x y z | |
| 61 | * @param *vlist is a structure holding information on vertex list. | |
| 62 | * @returns TS_SUCCESS on successful execution, TS_FAIL otherwise. | |
| 63 | */ | |
| 64 | ||
| 65 | ts_bool print_vertex_list(ts_vertex_list *vlist); | |
| 66 | ||
| 67 | /** @brief Prints the neighbours of all the vertices | |
| 68 | * | |
| 69 | * The function is meant more or less as a debug tool, but can be used in production | |
| 70 | * environment aswell. | |
| 71 | * the output is in form of idx(number of neighbours): (x1,y1,z1) (x2,y2,z2) ... | |
| 72 | * @param *vlist is a structure holding information on vertex list. | |
| 73 | * @returns TS_SUCCESS on successful execution, TS_FAIL otherwise. | |
| 74 | */ | |
| 75 | ts_bool print_vertex_neighbours(ts_vertex_list *vlist); | |
| 76 | ||
| 77 | ||
| 78 | /** @brief Function outputs the vetex list file to comply to old fortran format | |
| 79 | * | |
| 80 | * @param *vlist is a list of vertices | |
| 81 | * @param *filename is a name of the output file to be created (note that if the file already | |
| 82 | * exists it will be overwritten. | |
| 83 | */ | |
| 84 | ts_bool write_vertex_fcompat_file(ts_vertex_list *vlist,ts_char *filename); | |
| 85 | ts_bool fprint_vertex_list(FILE *fh,ts_vertex_list *vlist); | |
| 86 | ts_bool fprint_tristar(FILE *fh, ts_vesicle *vesicle); | |
| 87 | ts_bool fprint_triangle_list(FILE *fh, ts_vesicle *vesicle); | |
| 88 | ts_bool fprint_vertex_data(FILE *fh,ts_vertex_list *vlist); | |
| 89 | ts_bool fprint_bonds(FILE *fh,ts_vesicle *vesicle); | |
| 90 | ts_bool write_dout_fcompat_file(ts_vesicle *vesicle, ts_char *filename); | |
| 91 | ts_bool read_tape_fcompat_file(ts_vesicle *vesicle, ts_char *filename); | |
| 92 | ||
| 93 | ||
| 94 | /** @brief Outputs file in vtk format, compatible with paraview. | |
| 95 | * | |
| 96 | * @param *vlist is a list of vertices | |
| 97 | * @param *filename is a name of the output file. If exists, it will be overwritten | |
| 98 | * @param *text is a description line (max. 255 characters) to be included in the file | |
| 99 | */ | |
| 100 | ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text); | |
| a6b1b5 | 101 | ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno); |
| SP | 102 | ts_bool write_master_xml_file(ts_char *filename); |
| 144784 | 103 | ts_bool write_pov_file(ts_vesicle *vesicle, char *filename); |
| SP | 104 | |
| 1ab449 | 105 | ts_tape *parsetape(char *filename); |
| SP | 106 | ts_bool tape_free(ts_tape *tape); |
| d7639a | 107 | |
| 1ab449 | 108 | ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration); |
| SP | 109 | ts_vesicle *restore_state(ts_uint *iteration); |
| d7639a | 110 | #endif |
