/* vim: set ts=4 sts=4 sw=4 noet : */ /* vim: set ts=4 sts=4 sw=4 noet : */ #include #include #include #include #include #include #include #include #include #include #include "io.h" #include /* a helper function that utilizes ts_string data structure and performs same as sprintf */ ts_uint ts_sprintf(ts_string *str, char *fmt, ...){ va_list ap; va_start(ap,fmt); ts_uint n=vsprintf(&(str->string[str->beg]),fmt,ap); va_end(ap); str->beg+=n; return n; } /* outputs additional data into paraview xml file */ ts_bool xml_trisurf_data(FILE *fh, ts_vesicle *vesicle){ ts_string *data=(ts_string *)malloc(sizeof(ts_sprintf)); data->string=(char *)malloc(5120000*sizeof(char)); /*TODO: warning, can break if the string is to long */ data->beg=0; xml_trisurf_header(fh, vesicle); xml_trisurf_tria(data,vesicle->tlist); xml_trisurf_tria_neigh(data,vesicle->tlist); xml_trisurf_vtx_neigh(data,vesicle->vlist); xml_trisurf_vtx_tristar(data,vesicle->vlist); xml_trisurf_nucleus(data,vesicle); xml_trisurf_constvolarea(data,V0,A0); //#ifdef COMPRESSION // char *compressed; // ts_uint nbytes=ts_compress_string64(data->string, data->beg-1, &compressed); //suppress null character at the end with by substracting 1 // fwrite(compressed, sizeof(unsigned char), nbytes, fh); // free (compressed); //#else fprintf(fh,"%s", data->string); //#endif free(data->string); /* TODO: valgrind is not ok with this! */ free(data); xml_trisurf_footer(fh); return TS_SUCCESS; } ts_bool xml_trisurf_header(FILE *fh, ts_vesicle *vesicle){ /* format current time */ time_t current_time; char *c_time_string; current_time = time(NULL); c_time_string = ctime(¤t_time); int npoly, nfono; fprintf(fh, "Trisurf (commit %s), compiled on %s %s\n",TS_VERSION, __DATE__, __TIME__); fprintf(fh, "%s\n", c_time_string); fprintf(fh, ""); fprintf(fh,"%s",tapetxt); fprintf(fh, "\n"); if(vesicle->poly_list!=NULL){ npoly=vesicle->poly_list->n; if(npoly!=0){ nfono=vesicle->poly_list->poly[0]->vlist->n; } else { nfono=0; } } else { npoly=0; nfono=0; } fprintf(fh, "\n", vesicle->vlist->n, npoly, nfono); return TS_SUCCESS; } ts_bool xml_trisurf_footer(FILE *fh){ fprintf(fh, "\n"); return TS_SUCCESS; } ts_bool xml_trisurf_tria(ts_string *data, ts_triangle_list *tlist){ ts_uint i; ts_sprintf(data,""); for(i=0; in;i++){ ts_sprintf(data,"%u %u %u ",tlist->tria[i]->vertex[0]->idx, tlist->tria[i]->vertex[1]->idx, tlist->tria[i]->vertex[2]->idx); } ts_sprintf(data,""); return TS_SUCCESS; } ts_bool xml_trisurf_tria_neigh(ts_string *data, ts_triangle_list *tlist){ ts_uint i; ts_sprintf(data,"\n"); for(i=0; in;i++){ ts_sprintf(data,"%u %u %u ",tlist->tria[i]->neigh[0]->idx, tlist->tria[i]->neigh[1]->idx, tlist->tria[i]->neigh[2]->idx); } ts_sprintf(data,"\n"); return TS_SUCCESS; } ts_bool xml_trisurf_vtx_neigh(ts_string *data, ts_vertex_list *vlist){ ts_uint i,j; for(i=0;in;i++){ ts_sprintf(data,"",vlist->vtx[i]->idx); for(j=0;jvtx[i]->neigh_no;j++){ ts_sprintf(data,"%u ",vlist->vtx[i]->neigh[j]->idx); } ts_sprintf(data, ""); } return TS_SUCCESS; } ts_bool xml_trisurf_vtx_tristar(ts_string *data, ts_vertex_list *vlist){ ts_uint i,j; for(i=0;in;i++){ ts_sprintf(data,"",vlist->vtx[i]->idx); for(j=0;jvtx[i]->tristar_no;j++){ ts_sprintf(data,"%u ",vlist->vtx[i]->tristar[j]->idx); } ts_sprintf(data, ""); } return TS_SUCCESS; } ts_bool xml_trisurf_nucleus(ts_string *data, ts_vesicle* vesicle){ if(vesicle->R_nucleus>0.0 || (vesicle->R_nucleusX>0.0 && vesicle->R_nucleusY>0.0 && vesicle->R_nucleusZ>0.0)){ ts_sprintf(data,"%.17e %.17e %.17e",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]); } return TS_SUCCESS; } ts_bool xml_trisurf_constvolarea(ts_string *data, ts_double volume, ts_double area){ ts_sprintf(data,"%.17e",volume); ts_sprintf(data,"%.17e",area); return TS_SUCCESS; }