#include #include #include #include #include #include #include #include #include #include "vesicle.h" ts_bool parseDump(char *dumpfname) { xmlDocPtr doc; xmlNodePtr cur; ts_vesicle *vesicle; doc = xmlParseFile(dumpfname); if (doc == NULL ) { fatal("Dump file could not be found or parsed. It is correct file?",1); } cur = xmlDocGetRootElement(doc); if (cur == NULL) { fatal("Dump file is empty.",1); } if (xmlStrcmp(cur->name, (const xmlChar *) "VTKFile")) { fatal("document of the wrong type, root node != story",1); } cur = cur->xmlChildrenNode; while (cur != NULL) { if ((!xmlStrcmp(cur->name, (const xmlChar *)"trisurf"))){ vesicle=parseTrisurfTag(doc, cur); } cur = cur->next; } xmlFreeDoc(doc); fprintf(stderr,"Restoration completed\n"); exit(0); vesicle_free(vesicle); return TS_SUCCESS; } ts_vesicle *parseTrisurfTag(xmlDocPtr doc, xmlNodePtr cur){ fprintf(stderr,"Parsing trisurf tag\n"); /* base64decode */ size_t cLen; /*size_t tLen; const unsigned char test[]="Test"; char *cTest=base64_encode(test, 4,&tLen); unsigned char *cuTest=base64_decode((char *)cTest,tLen,&tLen); cuTest[tLen]=0; fprintf(stderr,"%s\n",cuTest); */ xmlChar *b64=xmlNodeListGetString(doc, cur->xmlChildrenNode, 1); unsigned char *compressed=base64_decode((char *)b64,strlen((char *)b64)-1,&cLen); /* uncompress */ unsigned char *subtree=(unsigned char *)malloc(512000*sizeof(unsigned char)); /* TODO: again, the uncompressed string must not exceed this */ z_stream infstream; infstream.zalloc = Z_NULL; infstream.zfree = Z_NULL; infstream.opaque = Z_NULL; infstream.avail_in = (ts_uint)cLen; // size of input infstream.next_in = compressed; // input char array infstream.avail_out = (ts_uint)512000; // size of output infstream.next_out = subtree; // output char array // the actual DE-compression work. inflateInit(&infstream); inflate(&infstream, Z_NO_FLUSH); inflateEnd(&infstream); fprintf(stderr,"%lu\n",cLen); subtree[infstream.total_out]='\0'; //zero terminate string fprintf(stderr,"%s\n",subtree); free(subtree); /*parse xml subtree */ xmlChar *nvtx, *npoly, *nfono; nvtx = xmlGetProp(cur, (xmlChar *)"nvtx"); npoly=xmlGetProp(cur, (xmlChar *)"npoly"); nfono=xmlGetProp(cur, (xmlChar *)"nfono"); fprintf(stderr,"nvtx=%u\n",atoi((char *)nvtx)); ts_vesicle *vesicle=init_vesicle(atoi((char *)nvtx),10,10,10,0.1); //vesicle->poly_list=init_poly_list(atoi((char *)npoly),atoi((char *)nmono), vesicle->vlist, vesicle); xmlFree(nvtx); xmlFree(npoly); xmlFree(nfono); return vesicle; }