From 1665aaef46e1bf85eb99f709bb596ab4fcc07f59 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 25 Apr 2014 07:52:42 +0000
Subject: [PATCH] Added extra calculation of Kc from 3<=l<=6
---
src/general.h | 22 ++++++++++++++++------
1 files changed, 16 insertions(+), 6 deletions(-)
diff --git a/src/general.h b/src/general.h
index 2999090..8165505 100644
--- a/src/general.h
+++ b/src/general.h
@@ -3,7 +3,7 @@
#include<stdarg.h>
#include<stdio.h>
-
+#include<gsl/gsl_complex.h>
/* @brief This is a header file, defining general constants and structures.
* @file header.h
* @author Samo Penic
@@ -48,6 +48,8 @@
#define TS_FAIL 1
/* CONSTANTS */
+
+#define TS_ID_FILAMENT 1
/* DATA TYPES */
/** @brief Sets the default datatype for ts_double
@@ -167,10 +169,11 @@
ts_uint idx;
ts_vertex *vtx1;
ts_vertex *vtx2;
- ts_double bond_length;
- ts_double bond_length_dual;
- ts_bool tainted;
+ ts_double bond_length;
+ ts_double bond_length_dual;
+ ts_bool tainted; //TODO: remove
ts_double energy;
+ ts_double x,y,z;
};
typedef struct ts_bond ts_bond;
@@ -213,12 +216,14 @@
ts_double dcell;
ts_double shift;
ts_double max_occupancy;
+ ts_double dmin_interspecies;
} ts_cell_list;
typedef struct {
ts_uint l;
ts_double **ulm;
+ gsl_complex **ulmComplex;
ts_double **sumUlm2;
ts_uint N;
ts_double **co;
@@ -257,13 +262,18 @@
ts_double cm[3];
ts_double volume;
ts_spharm *sphHarmonics;
-
+// Polymers outside the vesicle and attached to the vesicle membrane (polymer brush):
ts_poly_list *poly_list;
+// Filaments inside the vesicle (not attached to the vesicel membrane:
+ ts_poly_list *filament_list;
+
ts_double spring_constant;
ts_double pressure;
ts_int pswitch;
-} ts_vesicle;
+ ts_double R_nucleus;
+
+} ts_vesicle;
--
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