From 42641cde38cfd1d27a2031604cc1397b5bd2849b Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 21 Mar 2014 20:57:24 +0000
Subject: [PATCH] Merge with trout-rnc.

---
 src/tape |   30 +++++++++++++++++++++---------
 1 files changed, 21 insertions(+), 9 deletions(-)

diff --git a/src/tape b/src/tape
index 1c0d279..bd62b6c 100644
--- a/src/tape
+++ b/src/tape
@@ -4,23 +4,35 @@
 # dmax is the max. bond length (in units l_min)
 dmax=1.7
 # bending rigidity of the membrane (in units kT)
-xk0=25.0
+xk0=10.0
 # max step size (in units l_min)
 stepsize=0.15
 
 # Pressure calculations
 # (pswitch=1: calc. p*dV energy contribution)
-pswitch = 1
-# pressure difference: p_inside - p_outside (in units l_min^3/kT):
-pressure=0.0
+pswitch = 0
+# pressure difference: p_inside - p_outside (in units kT/l_min^3):
+pressure=0.1
 
-####### Polymer definitions ###########
+####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=30
+npoly=300
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
 k_spring=800
+
+####### Filament (inside the vesicle) definitions ###########
+# nfil is a number of filaments inside the vesicle
+nfil=1
+# nfono is a number of monomers in each filament
+nfono=300
+# Persistence lenght of the filaments (in units l_min)
+xi=100
+
+####### Nucleus (inside the vesicle) ###########
+# Radius of an impenetrable hard sphere inside the vesicle
+R_nucleus=5
 
 #######  Cell definitions ############
 nxmax=60
@@ -30,11 +42,11 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=5000
+mcsweeps=500
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
-inititer=1
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=2000
+iterations=20
 
 
 #shut up if we are using cluster!!!

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