From b4e2e6dbd5049ae279f0f74838cd21b625148c72 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Thu, 11 Oct 2018 10:34:25 +0000
Subject: [PATCH] Changes in plates movement

---
 src/restore.c |    7 ++++++-
 1 files changed, 6 insertions(+), 1 deletions(-)

diff --git a/src/restore.c b/src/restore.c
index a490d53..c89ff6d 100644
--- a/src/restore.c
+++ b/src/restore.c
@@ -417,6 +417,7 @@
 	char *b;
 	int idx, polyidx;
 	char *token[2];
+	int temp_cnt=0;
 	while (child != NULL) {
 		conname=xmlGetProp(child, (xmlChar *)"Name");
 		if ((!xmlStrcmp(child->name, (const xmlChar *)"DataArray")) && !xmlStrcmp(conname, (const xmlChar *)"connectivity") ){
@@ -428,11 +429,15 @@
 			while(token[0]!=NULL){
 				if(idx<3*(vesicle->vlist->n-2)){
 					bond_add(vesicle->blist, vesicle->vlist->vtx[atoi(token[0])], vesicle->vlist->vtx[atoi(token[1])]);
+					//fprintf(stderr,"Bonds in vesicle count idx=%d\n",idx);
 				}
 				else {
 				//find grafted vtx
 					if(vesicle->tape->npoly && vesicle->tape->nmono && (vesicle->tape->nmono-1)==(idx-3*(vesicle->vlist->n-2))%(vesicle->tape->nmono)
-						&& idx<(3*vesicle->vlist->n-2+vesicle->tape->nmono*vesicle->tape->npoly+vesicle->tape->npoly)){
+						&& idx<(3*vesicle->vlist->n-2+vesicle->tape->nmono*vesicle->tape->npoly)){
+						temp_cnt++;
+						//fprintf(stderr,"%d: Bonds in poly count idx=%d, t1=%s t2=%s\n",temp_cnt,idx, token[0], token[1]);
+						
 						polyidx=(idx-3*(vesicle->vlist->n-2))/(vesicle->tape->nmono);
 						//fprintf(stderr,"poly=%d, vertex=%d\n",polyidx,atoi(token[0]));
 						vesicle->poly_list->poly[polyidx]->grafted_vtx=vesicle->vlist->vtx[atoi(token[0])];

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