From 0652ee2715994b48a9bbfd1132bf0b65ad206289 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 27 Nov 2013 18:46:13 +0000
Subject: [PATCH] commiting all changes.

---
 src/io.c |   24 +++++++++++++++++-------
 1 files changed, 17 insertions(+), 7 deletions(-)

diff --git a/src/io.c b/src/io.c
index 2127796..4a36f88 100644
--- a/src/io.c
+++ b/src/io.c
@@ -294,14 +294,15 @@
 
 
 
-ts_vesicle *parsetape(ts_uint *iterations){
+ts_vesicle *parsetape(ts_uint *mcsweeps, ts_uint *inititer, ts_uint *iterations){
     long int nshell=17,ncxmax=60, ncymax=60, nczmax=60;  // THIS IS DUE TO CONFUSE BUG!
     char *buf=malloc(255*sizeof(char));
-    long int brezveze0=1;
+	buf[0]=0;
+    long int smps=1;
     long int brezveze1=1;
     long int brezveze2=1;
     ts_double xk0=25.0, dmax=1.67,stepsize=0.15;
-    *iterations=1000;
+	long int iter=1000, init=1000, mcsw=1000;
     cfg_opt_t opts[] = {
         CFG_SIMPLE_INT("nshell", &nshell),
         CFG_SIMPLE_FLOAT("dmax", &dmax),
@@ -310,10 +311,12 @@
         CFG_SIMPLE_INT("nxmax", &ncxmax),
         CFG_SIMPLE_INT("nymax", &ncymax),
         CFG_SIMPLE_INT("nzmax", &nczmax),
-        CFG_SIMPLE_INT("iterations",iterations),
+        CFG_SIMPLE_INT("iterations",&iter),
+	CFG_SIMPLE_INT("mcsweeps",&mcsw),
+	CFG_SIMPLE_INT("inititer", &init),
         CFG_SIMPLE_BOOL("quiet",&quiet),
-        CFG_SIMPLE_STR("multiprocessing",buf),
-        CFG_SIMPLE_INT("smp_cores",&brezveze0),
+        CFG_SIMPLE_STR("multiprocessing",&buf),
+        CFG_SIMPLE_INT("smp_cores",&smps),
         CFG_SIMPLE_INT("cluster_nodes",&brezveze1),
         CFG_SIMPLE_INT("distributed_processes",&brezveze2),
         CFG_END()
@@ -329,6 +332,9 @@
 	fatal("Invalid tape!",100);
 	}
 	ts_vesicle *vesicle;
+    	*iterations=iter;
+	*inititer=init;
+	*mcsweeps=mcsw;
 	vesicle=initial_distribution_dipyramid(nshell,ncxmax,ncymax,nczmax,stepsize);
     vesicle->nshell=nshell;
     vesicle->dmax=dmax*dmax;
@@ -338,7 +344,11 @@
     vesicle->clist->ncmax[1]=ncymax;
     vesicle->clist->ncmax[2]=nczmax;
     vesicle->clist->max_occupancy=8;
-
+	if(strcmp(buf,"smp")==0){	
+	vesicle->threads=smps;
+	} else {
+	vesicle->threads=1;
+	}
     cfg_free(cfg);
 	free(buf);
   //  fprintf(stderr,"NSHELL=%u\n",vesicle->nshell);

--
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