From a8e354c7fad70eb7fdfda62ec83faf1be6c4ed44 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 24 Jan 2023 20:03:01 +0000
Subject: [PATCH] Changes in code and README for easier compilation. May break something

---
 src/tape |   42 +++++++++++++++++++++++++++++++++---------
 1 files changed, 33 insertions(+), 9 deletions(-)

diff --git a/src/tape b/src/tape
index a7baa73..f30ddaa 100644
--- a/src/tape
+++ b/src/tape
@@ -1,6 +1,6 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
-nshell=17
+nshell=7
 # dmax is the max. bond length (in units l_min)
 dmax=1.7
 # dmin_interspecies in the min. dist. between different vertex species (in units l_min)
@@ -23,15 +23,20 @@
 #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
 constareaswitch=0
 
+
+#Stretching
+stretchswitch=0
+xkA0=1.0
+
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=800
+npoly=0
 # nmono is a number of monomers in each polymer
-nmono=6
+nmono=0
 # Spring constant between monomers of the polymer
 k_spring=800
 #set to 1 if half of the polymeres are inside the vesicle
-internal_poly=1
+internal_poly=0
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
@@ -48,9 +53,9 @@
 R_nucleusY=0
 R_nucleusZ=0
 #######  Cell definitions ############
-nxmax=60
-nymax=60
-nzmax=60
+nxmax=100
+nymax=100
+nzmax=100
 
 
 ####### Program Control ############
@@ -59,10 +64,10 @@
 mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 #2
-inititer=10
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
 #10000
-iterations=100
+iterations=10
 
 
 ###### Spherical harmonics ###########
@@ -84,3 +89,22 @@
 #max number of processes in distributed (voluntary) environment
 distributed_processes=50
 #cuda options???
+
+
+#number of vertices with spontaneous curvature (integer)
+number_of_vertices_with_c0=200
+#c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float)
+c0=1.0
+#energy of attraction of vertices with spontaneous curvature (float, positive value for attraction)
+w=10.0
+#direct force on vesicles with spontaneous curvature (float)
+F=2.0
+
+
+
+#plane confinement
+plane_confinement_switch=0
+#final plane distance (float in lmin)
+plane_d=10
+#plane to vesicle repulsion force while closing
+plane_F=10

--
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