From a8e354c7fad70eb7fdfda62ec83faf1be6c4ed44 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 24 Jan 2023 20:03:01 +0000
Subject: [PATCH] Changes in code and README for easier compilation. May break something
---
src/snapshot.c | 19 +++++++++++++++++--
1 files changed, 17 insertions(+), 2 deletions(-)
diff --git a/src/snapshot.c b/src/snapshot.c
index cabb1f8..81fb476 100644
--- a/src/snapshot.c
+++ b/src/snapshot.c
@@ -10,6 +10,8 @@
#include<config.h>
#include <time.h>
#include "io.h"
+#include "globals.h"
+
/* a helper function that utilizes ts_string data structure and performs same as sprintf */
ts_uint ts_sprintf(ts_string *str, char *fmt, ...){
va_list ap;
@@ -23,8 +25,8 @@
/* outputs additional data into paraview xml file */
ts_bool xml_trisurf_data(FILE *fh, ts_vesicle *vesicle){
- ts_string *data=(ts_string *)malloc(sizeof(ts_sprintf));
- data->string=(char *)malloc(512000*sizeof(char)); /*TODO: warning, can break if the string is to long */
+ ts_string *data=(ts_string *)malloc(sizeof(ts_string));
+ data->string=(char *)malloc(5120000*sizeof(char)); /*TODO: warning, can break if the string is to long */
data->beg=0;
xml_trisurf_header(fh, vesicle);
@@ -32,6 +34,8 @@
xml_trisurf_tria_neigh(data,vesicle->tlist);
xml_trisurf_vtx_neigh(data,vesicle->vlist);
xml_trisurf_vtx_tristar(data,vesicle->vlist);
+ xml_trisurf_nucleus(data,vesicle);
+ xml_trisurf_constvolarea(data,V0,A0);
#ifdef COMPRESSION
char *compressed;
ts_uint nbytes=ts_compress_string64(data->string, data->beg-1, &compressed); //suppress null character at the end with by substracting 1
@@ -124,7 +128,18 @@
return TS_SUCCESS;
}
+ts_bool xml_trisurf_nucleus(ts_string *data, ts_vesicle* vesicle){
+ if(vesicle->R_nucleus>0.0 || (vesicle->R_nucleusX>0.0 && vesicle->R_nucleusY>0.0 && vesicle->R_nucleusZ>0.0)){
+ ts_sprintf(data,"<nucleus>%.17e %.17e %.17e</nucleus>",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]);
+ }
+ return TS_SUCCESS;
+}
+ts_bool xml_trisurf_constvolarea(ts_string *data, ts_double volume, ts_double area){
+ ts_sprintf(data,"<constant_volume>%.17e</constant_volume>",volume);
+ ts_sprintf(data,"<constant_area>%.17e</constant_area>",area);
+ return TS_SUCCESS;
+}
/* UTILITIES */
--
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