From 13f45e61241e43d709df10228b946ed9870e8ebb Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 23 Apr 2019 16:12:05 +0000
Subject: [PATCH] Fixing the vesicle 123 and neighbours just for a test

---
 src/tape |   28 ++++++++++++++++++++++++++--
 1 files changed, 26 insertions(+), 2 deletions(-)

diff --git a/src/tape b/src/tape
index 93e42d7..5e1be37 100644
--- a/src/tape
+++ b/src/tape
@@ -23,9 +23,14 @@
 #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
 constareaswitch=0
 
+
+#Stretching
+stretchswitch=1
+xkA0=1.0
+
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=400
+npoly=0
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
@@ -59,7 +64,7 @@
 mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 #2
-inititer=1
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
 #10000
 iterations=100
@@ -84,3 +89,22 @@
 #max number of processes in distributed (voluntary) environment
 distributed_processes=50
 #cuda options???
+
+
+#number of vertices with spontaneous curvature (integer)
+number_of_vertices_with_c0=100
+#c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float)
+c0=0.5
+#energy of attraction of vertices with spontaneous curvature (float, positive value for attraction)
+w=10.0
+#direct force on vesicles with spontaneous curvature (float)
+F=2.0
+
+
+
+#plane confinement
+plane_confinement_switch=1
+#final plane distance (float in lmin)
+plane_d=10
+#plane to vesicle repulsion force while closing
+plane_F=10

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