From 13f45e61241e43d709df10228b946ed9870e8ebb Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 23 Apr 2019 16:12:05 +0000
Subject: [PATCH] Fixing the vesicle 123 and neighbours just for a test
---
src/main.c | 29 ++++++++++++++++++++++++++---
1 files changed, 26 insertions(+), 3 deletions(-)
diff --git a/src/main.c b/src/main.c
index 7c1ff29..26be035 100644
--- a/src/main.c
+++ b/src/main.c
@@ -48,19 +48,20 @@
ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n");
ts_fprintf(stdout,"************************************************\n\n");
vesicle = parseDump(command_line_args.dump_from_vtk);
+// write_vertex_xml_file(vesicle,9999); // here you can test if restoration and rewritting results in the same dump file. Only the date od creation of dump file must differ.
tape = vesicle->tape;
int arguments_no;
FILE *fd=fopen(".status","r");
if(fd!=NULL){
arguments_no=fscanf(fd,"%u", &start_iteration);
if(arguments_no==0){
- ts_fprintf(stdout,"No information of start iteration in .status file");
+ ts_fprintf(stdout,"No information of start iteration in .status file\n");
}
fclose(fd);
- start_iteration++;
+ start_iteration++;
}
else
- ts_fprintf(stdout,"No .status file. The iteration count will start from 0");
+ ts_fprintf(stdout,"No .status file. The iteration count will start from 0\n");
/* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */
// tape=parsetape(command_line_args.tape_fullfilename);
// vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
@@ -126,6 +127,28 @@
}
}
//printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]);
+// write_vertex_xml_file(vesicle,0);
+// exit(1);
+
+ //write_vertex_xml_file(vesicle,1000);
+
+
+ //fix some vertices on mesh. Don't allow them to move.
+
+ ts_uint i,j;
+ ts_vertex *vtx;
+ for(i=0;i<vesicle->vlist->n;i++){
+ if(vesicle->vlist->vtx[i]->idx==123){
+ vtx=vesicle->vlist->vtx[i];
+ vtx->fixed=1;
+ for(j=0;j<vtx->neigh_no;j++){
+ vtx->neigh[j]->fixed=1;
+ }
+ }
+ }
+
+
+
run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
write_master_xml_file(command_line_args.output_fullfilename);
--
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