From ff8152b46e7957beffeafca580abc90df47d9d28 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 21 Mar 2014 21:15:31 +0000
Subject: [PATCH] Merge branch 'trisurf-polyel'

---
 src/frame.c |   36 +++++++++++++++++++++---------------
 1 files changed, 21 insertions(+), 15 deletions(-)

diff --git a/src/frame.c b/src/frame.c
index d2d7e10..aeaef21 100644
--- a/src/frame.c
+++ b/src/frame.c
@@ -22,7 +22,7 @@
         vtx[i]->y-=vesicle->cm[1];
         vtx[i]->z-=vesicle->cm[2]; 
     } 
-
+//move polymers for the same vector as we moved vesicle
 	for(i=0;i<vesicle->poly_list->n;i++){
 		for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
 			vesicle->poly_list->poly[i]->vlist->vtx[j]->x-=vesicle->cm[0];
@@ -30,22 +30,24 @@
 			vesicle->poly_list->poly[i]->vlist->vtx[j]->z-=vesicle->cm[2];
 		}
     }
+//move filaments for the same vector as we moved vesicle
+	for(i=0;i<vesicle->filament_list->n;i++){
+		for(j=0;j<vesicle->filament_list->poly[i]->vlist->n;j++){
+			vesicle->filament_list->poly[i]->vlist->vtx[j]->x-=vesicle->cm[0];
+			vesicle->filament_list->poly[i]->vlist->vtx[j]->y-=vesicle->cm[1];
+			vesicle->filament_list->poly[i]->vlist->vtx[j]->z-=vesicle->cm[2];
+		}
+    }
 
-
-    vesicle->cm[0]=0;
-    vesicle->cm[1]=0;
-    vesicle->cm[2]=0;
+    vesicle->cm[0]=0.0;
+    vesicle->cm[1]=0.0;
+    vesicle->cm[2]=0.0;
 
     return TS_SUCCESS;
 }
 
 ts_bool cell_occupation(ts_vesicle *vesicle){
     ts_uint i,j,cellidx, n=vesicle->vlist->n;
-    //ts_double shift;
-    //ts_double dcell;
-    //shift=(ts_double) vesicle->clist->ncmax[0]/2;
-    //dcell=1.0/(1.0 + vesicle->stepsize);
-    //`fprintf(stderr, "Bil sem tu\n"); 
 
     cell_list_cell_occupation_clear(vesicle->clist);
     for(i=0;i<n;i++){
@@ -56,17 +58,21 @@
     cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->vlist->vtx[i]);
     }
 
+//Add all polymers to cells
     for(i=0;i<vesicle->poly_list->n;i++){
 	for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
     	cellidx=vertex_self_avoidance(vesicle, vesicle->poly_list->poly[i]->vlist->vtx[j]);
     	cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->poly_list->poly[i]->vlist->vtx[j]);
 	}
     }
+//Add all filaments to cells
+     for(i=0;i<vesicle->filament_list->n;i++){
+	for(j=0;j<vesicle->filament_list->poly[i]->vlist->n;j++){
+    	cellidx=vertex_self_avoidance(vesicle, vesicle->filament_list->poly[i]->vlist->vtx[j]);
+    	cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->filament_list->poly[i]->vlist->vtx[j]);
+	}
+    }
+   
 
-    
-
-    //fprintf(stderr, "Bil sem tu\n"); 
-	//if(dcell);
-	//if(shift);
     return TS_SUCCESS;
 }

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