From fe24d29b3c8684f08dccd01f5785aa48b7137322 Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Tue, 25 Mar 2014 12:49:06 +0000
Subject: [PATCH] Added nucleus. Better initial configuration of filaments.

---
 src/tape |   13 ++++++++-----
 1 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/src/tape b/src/tape
index ac316ef..e7e42e7 100644
--- a/src/tape
+++ b/src/tape
@@ -3,6 +3,8 @@
 nshell=17
 # dmax is the max. bond length (in units l_min)
 dmax=1.7
+# dmin_interspecies in the min. dist. between different vertex species (in units l_min)
+dmin_interspecies=1.2
 # bending rigidity of the membrane (in units kT)
 xk0=10.0
 # max step size (in units l_min)
@@ -12,7 +14,7 @@
 # (pswitch=1: calc. p*dV energy contribution)
 pswitch = 0
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
-pressure=0.0
+pressure=-2.0
 
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
@@ -24,10 +26,11 @@
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
-nfil=1
+nfil=2
 # nfono is a number of monomers in each filament
 nfono=300
-# Spring constant between monomers of the filament
+# Persistence lenght of the filaments (in units l_min)
+xi=100
 
 ####### Nucleus (inside the vesicle) ###########
 # Radius of an impenetrable hard sphere inside the vesicle
@@ -41,11 +44,11 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=300
+mcsweeps=1000
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=300
+iterations=100
 
 
 #shut up if we are using cluster!!!

--
Gitblit v1.9.3