From fc6f3ef0a9822f3d5f06d38e556dbb5f2e985f4a Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 13 Jul 2016 17:33:28 +0000
Subject: [PATCH] First attempt in solving an issue of dense packed internal pegs. They are recreated as many times as needed.

---
 src/Makefile.am |   41 ++++++++++++++++++++++++-----------------
 1 files changed, 24 insertions(+), 17 deletions(-)

diff --git a/src/Makefile.am b/src/Makefile.am
index e899cd3..fb2c46b 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,17 +1,24 @@
-trisurfdir=../
-trisurf_PROGRAMS = trisurf
-trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c bondflip.c main.c poly.c
-#trisurf_LDFLAGS = -lm -lconfuse
-shdiscoverdir=../
-shdiscover_PROGRAMS= shdiscover
-shdiscover_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c shdiscover.c poly.c
-AM_CFLAGS = -Wall -Werror
-co_testdir=../
-co_test_PROGRAMS=co_test
-co_test_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c co_test.c frame.c bondflip.c poly.c
-spherical_trisurfdir=../
-spherical_trisurf_PROGRAMS = spherical_trisurf
-spherical_trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf.c sh.c bondflip.c poly.c
-spherical_trisurf_ffdir=../
-spherical_trisurf_ff_PROGRAMS = spherical_trisurf_ff
-spherical_trisurf_ff_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf_ff.c sh.c bondflip.c poly.c
+bin_PROGRAMS = trisurf tsmeasure
+trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c dumpstate.c frame.c energy.c timestep.c vertexmove.c bondflip.c main.c poly.c stats.c sh.c shcomplex.c constvol.c snapshot.c restore.c
+GITVERSION:=$(shell git --no-pager describe --tags --always --dirty)
+AM_CFLAGS = -Wall -Werror -DTS_VERSION=\"$(GITVERSION)\" -fgnu89-inline
+AM_CPPFLAGS = ${libxml2_CFLAGS} -fgnu89-inline
+trisurf_LDADD = ${libcurl_LIBS} ${libxml2_LIBS}
+#shdiscoverdir=../
+#shdiscover_PROGRAMS= shdiscover
+#shdiscover_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c shdiscover.c poly.c stats.c shcomplex.c
+#co_testdir=../
+#co_test_PROGRAMS=co_test
+#co_test_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c co_test.c frame.c bondflip.c poly.c stats.c shcomplex.c
+#spherical_trisurfdir=../
+#spherical_trisurf_PROGRAMS = spherical_trisurf
+#spherical_trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf.c sh.c bondflip.c poly.c stats.c shcomplex.c
+#spherical_trisurf_ffdir=../
+#spherical_trisurf_ff_PROGRAMS = spherical_trisurf_ff
+#spherical_trisurf_ff_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf_ff.c sh.c bondflip.c poly.c stats.c shcomplex.c
+
+
+tsmeasure_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c dumpstate.c frame.c energy.c timestep.c vertexmove.c bondflip.c tsmeasure.c poly.c stats.c sh.c shcomplex.c constvol.c snapshot.c restore.c
+tsmeasure_LDADD = ${libcurl_LIBS} ${libxml2_LIBS}
+#gitversion.c: .git/HEAD .git/index
+#    echo "const char *gitversion = \"$(shell git rev-parse HEAD)\";" > $@

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