From f3d3cb6eb7bc70c82aa0e57c693b259c26a7f84e Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 21 Jun 2016 20:33:13 +0000
Subject: [PATCH] Removed accidentaly added spontaneous curvature settings.

---
 src/tape |   61 ++++++++++++++++++++++++++----
 1 files changed, 52 insertions(+), 9 deletions(-)

diff --git a/src/tape b/src/tape
index 0351c83..3672000 100644
--- a/src/tape
+++ b/src/tape
@@ -1,14 +1,50 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
-nshell=17
-# dmax is the square of the bond length 
-dmax=1.67
-# bending rigidity of the membrane 
-xk0=25.0
-# max step size 
+nshell=5
+# dmax is the max. bond length (in units l_min)
+dmax=1.7
+# dmin_interspecies in the min. dist. between different vertex species (in units l_min)
+dmin_interspecies=1.2
+# bending rigidity of the membrane (in units kT)
+xk0=10.0
+# max step size (in units l_min)
 stepsize=0.15
 
+# Pressure calculations
+# (pswitch=1: calc. p*dV energy contribution)
+pswitch = 0
+# pressure difference: p_inside - p_outside (in units kT/l_min^3):
+pressure=-10.0
 
+#Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
+constvolswitch=0
+constvolprecision=1e-14
+
+#Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
+constareaswitch=0
+
+####### Polymer (brush) definitions ###########
+# npoly is a number of polymers attached to npoly distinct vertices on vesicle
+npoly=0
+# nmono is a number of monomers in each polymer
+nmono=2
+# Spring constant between monomers of the polymer
+k_spring=800
+
+####### Filament (inside the vesicle) definitions ###########
+# nfil is a number of filaments inside the vesicle
+nfil=0
+# nfono is a number of monomers in each filament
+nfono=3
+# Persistence lenght of the filaments (in units l_min)
+xi=0
+
+####### Nucleus (inside the vesicle) ###########
+# Radius of an impenetrable hard sphere inside the vesicle
+R_nucleus=0
+R_nucleusX=6.0
+R_nucleusY=12.0
+R_nucleusZ=6.0
 #######  Cell definitions ############
 nxmax=60
 nymax=60
@@ -17,13 +53,20 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=100
+#200000
+mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
-inititer=100
+#2
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=1000
+#10000
+iterations=100
 
 
+###### Spherical harmonics ###########
+# If 0 then spherical harmonics are not calculated at all.
+spherical_harmonics_coefficients=21
+
 #shut up if we are using cluster!!!
 quiet=false
 

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