From f0bcead40eea062fb556e142f6f1f7a7240bc144 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Tue, 16 Feb 2016 10:10:45 +0000
Subject: [PATCH] Added base64 encoding to zipped data

---
 src/main.c |   17 +++++++++++++----
 1 files changed, 13 insertions(+), 4 deletions(-)

diff --git a/src/main.c b/src/main.c
index 8a3a550..c55d30a 100644
--- a/src/main.c
+++ b/src/main.c
@@ -14,6 +14,7 @@
 #include "poly.h"
 #include "sh.h"
 #include "shcomplex.h"
+#include "dumpstate.h"
 
 /** Entrance function to the program
   * @param argv is a number of parameters used in program call (including the program name
@@ -28,18 +29,26 @@
 	force_from_tape=0;
 	parse_args(argv,argc); // sets global variable command_line_args (defined in io.h)
 	ts_fprintf(stdout,"Starting program...\n\n");
-	if(command_line_args.force_from_tape){
+
+    if(command_line_args.dump_from_vtk[0]!=0){
+		ts_fprintf(stdout,"************************************************\n");
+		ts_fprintf(stdout,"***** Dumping vesicle from VTK points list *****\n");
+		ts_fprintf(stdout,"************************************************\n\n");
+        tape=parsetape(command_line_args.tape_fullfilename);
+        vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
+    }
+	else if(command_line_args.force_from_tape){
 		ts_fprintf(stdout,"************************************************\n");
 		ts_fprintf(stdout,"**** Generating initial geometry from tape *****\n");
 		ts_fprintf(stdout,"************************************************\n\n");
-		tape=parsetape("tape");
+		tape=parsetape(command_line_args.tape_fullfilename);
 		vesicle=create_vesicle_from_tape(tape);
 	} else {
 
 		ts_fprintf(stdout,"**********************************************************************\n");
 		ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n");
 		ts_fprintf(stdout,"**********************************************************************\n\n");
-		tape=parsetape("tape");
+		tape=parsetape(command_line_args.tape_fullfilename);
 		vesicle=restore_state(&start_iteration);
         if(vesicle==NULL){
             ts_fprintf(stderr, "Dump file does not exist or is not a regular file! Did you mean to invoke trisurf with --force-from-tape option?\n\n");
@@ -90,7 +99,7 @@
 	}
 
 	run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
-	write_master_xml_file("test.pvd");
+	write_master_xml_file(command_line_args.output_fullfilename);
 	write_dout_fcompat_file(vesicle,"dout");
 	vesicle_free(vesicle);
 	tape_free(tape);

--
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