From eb95833ea5316a0dcfff4e5144e6fd7bbbd261f2 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Tue, 21 Jun 2016 12:49:09 +0000
Subject: [PATCH] Fix in number of spontaneous curvature vertices calculation

---
 src/tape |   40 ++++++++++++++++++++++++++++++++++------
 1 files changed, 34 insertions(+), 6 deletions(-)

diff --git a/src/tape b/src/tape
index 2ad7f21..cb5662e 100644
--- a/src/tape
+++ b/src/tape
@@ -14,11 +14,18 @@
 # (pswitch=1: calc. p*dV energy contribution)
 pswitch = 0
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
-pressure=-2.0
+pressure=-10.0
+
+#Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
+constvolswitch=0
+constvolprecision=1e-14
+
+#Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
+constareaswitch=0
 
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=0
+npoly=3
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
@@ -34,8 +41,10 @@
 
 ####### Nucleus (inside the vesicle) ###########
 # Radius of an impenetrable hard sphere inside the vesicle
-R_nucleus=5
-
+R_nucleus=0
+R_nucleusX=6.0
+R_nucleusY=12.0
+R_nucleusZ=6.0
 #######  Cell definitions ############
 nxmax=60
 nymax=60
@@ -44,15 +53,24 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=10000
+#200000
+mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
+#2
 inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=2000
+#10000
+iterations=100
 
+
+###### Spherical harmonics ###########
+# If 0 then spherical harmonics are not calculated at all.
+spherical_harmonics_coefficients=21
 
 #shut up if we are using cluster!!!
 quiet=false
+ 
+
 
 #what type of multiprocessing? (*none, smp, cluster, distributed, cuda, auto)
 #currently only none makes sense.
@@ -64,3 +82,13 @@
 #max number of processes in distributed (voluntary) environment
 distributed_processes=50
 #cuda options???
+
+
+#NirGov branch only!
+#number of vertices with spontaneous curvature (integer)
+number_of_vertices_with_c0=1447
+#spontaneous curvature (float)
+c0=2.0
+#energy of attraction of vertices with spontaneous curvature
+w=1.0
+

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