From ea1cce4c80ddb68c0b46a6873ef3b64cc4a958a1 Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Mon, 24 Mar 2014 16:37:44 +0000
Subject: [PATCH] Added dmin_interspecies.
---
src/frame.c | 44 ++++++++++++++++++++++++++++++--------------
1 files changed, 30 insertions(+), 14 deletions(-)
diff --git a/src/frame.c b/src/frame.c
index 1ee270b..237aa87 100644
--- a/src/frame.c
+++ b/src/frame.c
@@ -2,8 +2,9 @@
#include "general.h"
#include "cell.h"
#include "frame.h"
+
ts_bool centermass(ts_vesicle *vesicle){
- ts_uint i, n=vesicle->vlist->n;
+ ts_uint i,j, n=vesicle->vlist->n;
ts_vertex **vtx=vesicle->vlist->vtx;
vesicle->cm[0]=0;
vesicle->cm[1]=0;
@@ -22,21 +23,32 @@
vtx[i]->y-=vesicle->cm[1];
vtx[i]->z-=vesicle->cm[2];
}
+//move polymers for the same vector as we moved vesicle
+ for(i=0;i<vesicle->poly_list->n;i++){
+ for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
+ vesicle->poly_list->poly[i]->vlist->vtx[j]->x-=vesicle->cm[0];
+ vesicle->poly_list->poly[i]->vlist->vtx[j]->y-=vesicle->cm[1];
+ vesicle->poly_list->poly[i]->vlist->vtx[j]->z-=vesicle->cm[2];
+ }
+ }
+//move filaments for the same vector as we moved vesicle
+ for(i=0;i<vesicle->filament_list->n;i++){
+ for(j=0;j<vesicle->filament_list->poly[i]->vlist->n;j++){
+ vesicle->filament_list->poly[i]->vlist->vtx[j]->x-=vesicle->cm[0];
+ vesicle->filament_list->poly[i]->vlist->vtx[j]->y-=vesicle->cm[1];
+ vesicle->filament_list->poly[i]->vlist->vtx[j]->z-=vesicle->cm[2];
+ }
+ }
- vesicle->cm[0]=0;
- vesicle->cm[1]=0;
- vesicle->cm[2]=0;
+ vesicle->cm[0]=0.0;
+ vesicle->cm[1]=0.0;
+ vesicle->cm[2]=0.0;
return TS_SUCCESS;
}
ts_bool cell_occupation(ts_vesicle *vesicle){
ts_uint i,j,cellidx, n=vesicle->vlist->n;
- //ts_double shift;
- //ts_double dcell;
- //shift=(ts_double) vesicle->clist->ncmax[0]/2;
- //dcell=1.0/(1.0 + vesicle->stepsize);
- //`fprintf(stderr, "Bil sem tu\n");
cell_list_cell_occupation_clear(vesicle->clist);
for(i=0;i<n;i++){
@@ -47,17 +59,21 @@
cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->vlist->vtx[i]);
}
+//Add all polymers to cells
for(i=0;i<vesicle->poly_list->n;i++){
for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
cellidx=vertex_self_avoidance(vesicle, vesicle->poly_list->poly[i]->vlist->vtx[j]);
cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->poly_list->poly[i]->vlist->vtx[j]);
}
}
+//Add all filaments to cells
+ for(i=0;i<vesicle->filament_list->n;i++){
+ for(j=0;j<vesicle->filament_list->poly[i]->vlist->n;j++){
+ cellidx=vertex_self_avoidance(vesicle, vesicle->filament_list->poly[i]->vlist->vtx[j]);
+ cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->filament_list->poly[i]->vlist->vtx[j]);
+ }
+ }
+
-
-
- //fprintf(stderr, "Bil sem tu\n");
- //if(dcell);
- //if(shift);
return TS_SUCCESS;
}
--
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