From e9c87efeb9235748e8d19a3f5a067ec442d8a500 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Thu, 17 Apr 2014 07:32:43 +0000
Subject: [PATCH] Changed atan to atan2 for transfroming coordinates from cartesian to spherical. Added function for reverse transformation
---
src/io.h | 58 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++-
1 files changed, 57 insertions(+), 1 deletions(-)
diff --git a/src/io.h b/src/io.h
index 2f3f19a..699c73e 100644
--- a/src/io.h
+++ b/src/io.h
@@ -1,6 +1,58 @@
#ifndef _IO_H
#define _IO_H
+/** @ Global variables for I/O operations like filenames etc. */
+/*static char mastername[1024];
+static char prefixname[1024];
+static ts_bool restore=0;
+static char tape[1024]; */
+int force_from_tape;
+
+
+typedef struct {
+ long int nshell;
+ long int ncxmax;
+ long int ncymax;
+ long int nczmax;
+ long int npoly;
+ long int nmono;
+ long int nfil;
+ long int nfono;
+ long int R_nucleus;
+ long int pswitch;
+ char *multiprocessing;
+ long int brezveze0;
+ long int brezveze1;
+ long int brezveze2;
+ ts_double xk0;
+ ts_double dmax;
+ ts_double dmin_interspecies;
+ ts_double stepsize;
+ ts_double kspring;
+ ts_double xi;
+ ts_double pressure;
+ long int iterations;
+ long int inititer;
+ long int mcsweeps;
+ long int quiet;
+ long int shc;
+} ts_tape;
+
+typedef struct{
+ ts_int force_from_tape;
+ ts_int reset_iteration_count;
+ char path[1024]; //path where all files should be added
+ char output_fullfilename[1024]; //name of the master file
+ char dump_fullfilename[1024]; //name of the dump file
+ char tape_fullfilename[1024]; //name of the tape file
+} ts_args;
+
+ts_args command_line_args;
+
+ts_bool parse_args(int argc, char **argv);
+
+
+
/** @brief Prints the position of vertices for the whole list
*
* The function is meant more or less as a debug tool, but can be used in production
@@ -48,7 +100,11 @@
ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
ts_bool write_master_xml_file(ts_char *filename);
-ts_vesicle *parsetape(ts_uint *iterations);
+ts_bool write_pov_file(ts_vesicle *vesicle, char *filename);
+ts_tape *parsetape(char *filename);
+ts_bool tape_free(ts_tape *tape);
+ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
+ts_vesicle *restore_state(ts_uint *iteration);
#endif
--
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