From e9c87efeb9235748e8d19a3f5a067ec442d8a500 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Thu, 17 Apr 2014 07:32:43 +0000
Subject: [PATCH] Changed atan to atan2 for transfroming coordinates from cartesian to spherical. Added function for reverse transformation
---
src/general.h | 27 +++++++++++++++++++--------
1 files changed, 19 insertions(+), 8 deletions(-)
diff --git a/src/general.h b/src/general.h
index 0372e7a..e47ef1c 100644
--- a/src/general.h
+++ b/src/general.h
@@ -3,7 +3,6 @@
#include<stdarg.h>
#include<stdio.h>
-
/* @brief This is a header file, defining general constants and structures.
* @file header.h
* @author Samo Penic
@@ -48,6 +47,8 @@
#define TS_FAIL 1
/* CONSTANTS */
+
+#define TS_ID_FILAMENT 1
/* DATA TYPES */
/** @brief Sets the default datatype for ts_double
@@ -164,12 +165,14 @@
} ts_vertex_list;
struct ts_bond {
- ts_uint idx;
+ ts_uint idx;
ts_vertex *vtx1;
ts_vertex *vtx2;
- ts_double bond_length;
- ts_double bond_length_dual;
- ts_bool tainted;
+ ts_double bond_length;
+ ts_double bond_length_dual;
+ ts_bool tainted; //TODO: remove
+ ts_double energy;
+ ts_double x,y,z;
};
typedef struct ts_bond ts_bond;
@@ -212,6 +215,7 @@
ts_double dcell;
ts_double shift;
ts_double max_occupancy;
+ ts_double dmin_interspecies;
} ts_cell_list;
@@ -256,11 +260,18 @@
ts_double cm[3];
ts_double volume;
ts_spharm *sphHarmonics;
-
+// Polymers outside the vesicle and attached to the vesicle membrane (polymer brush):
ts_poly_list *poly_list;
- ts_double spring_constant;
-} ts_vesicle;
+// Filaments inside the vesicle (not attached to the vesicel membrane:
+ ts_poly_list *filament_list;
+ ts_double spring_constant;
+ ts_double pressure;
+ ts_int pswitch;
+
+ ts_double R_nucleus;
+
+} ts_vesicle;
--
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