From e984829db39b2778e4f66c34524329ad09749c45 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Mon, 11 Jul 2016 19:29:21 +0000
Subject: [PATCH] Added possibility of internal pegs. It can break the system however
---
src/frame.c | 107 +++++++++++++++++++++++++++++++++++------------------
1 files changed, 71 insertions(+), 36 deletions(-)
diff --git a/src/frame.c b/src/frame.c
index f89f6bc..d81ba7e 100644
--- a/src/frame.c
+++ b/src/frame.c
@@ -1,56 +1,91 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
#include<stdlib.h>
#include "general.h"
#include "cell.h"
+#include "frame.h"
+
+#include "triangle.h"
ts_bool centermass(ts_vesicle *vesicle){
- ts_uint i;
+ ts_uint i,j, n=vesicle->vlist->n;
+ ts_vertex **vtx=vesicle->vlist->vtx;
vesicle->cm[0]=0;
vesicle->cm[1]=0;
vesicle->cm[2]=0;
- for(i=0;i<vesicle->vlist.n;i++){
- vesicle->cm[0]+=vesicle->vlist.vertex[i].x;
- vesicle->cm[1]+=vesicle->vlist.vertex[i].y;
- vesicle->cm[2]+=vesicle->vlist.vertex[i].z;
+ for(i=0;i<n;i++){
+ vesicle->cm[0]+=vtx[i]->x;
+ vesicle->cm[1]+=vtx[i]->y;
+ vesicle->cm[2]+=vtx[i]->z;
}
- vesicle->cm[0]/=(float)vesicle->vlist.n;
- vesicle->cm[1]/=(float)vesicle->vlist.n;
- vesicle->cm[2]/=(float)vesicle->vlist.n;
+ vesicle->cm[0]/=(ts_float)n;
+ vesicle->cm[1]/=(ts_float)n;
+ vesicle->cm[2]/=(ts_float)n;
+
+ for(i=0;i<n;i++){
+ vtx[i]->x-=vesicle->cm[0];
+ vtx[i]->y-=vesicle->cm[1];
+ vtx[i]->z-=vesicle->cm[2];
+ }
+//move polymers for the same vector as we moved vesicle
+ for(i=0;i<vesicle->poly_list->n;i++){
+ for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
+ vesicle->poly_list->poly[i]->vlist->vtx[j]->x-=vesicle->cm[0];
+ vesicle->poly_list->poly[i]->vlist->vtx[j]->y-=vesicle->cm[1];
+ vesicle->poly_list->poly[i]->vlist->vtx[j]->z-=vesicle->cm[2];
+ }
+ }
+//move filaments for the same vector as we moved vesicle
+ for(i=0;i<vesicle->filament_list->n;i++){
+ for(j=0;j<vesicle->filament_list->poly[i]->vlist->n;j++){
+ vesicle->filament_list->poly[i]->vlist->vtx[j]->x-=vesicle->cm[0];
+ vesicle->filament_list->poly[i]->vlist->vtx[j]->y-=vesicle->cm[1];
+ vesicle->filament_list->poly[i]->vlist->vtx[j]->z-=vesicle->cm[2];
+ }
+ }
+//move nucleus for the same vector as we moved vesicle
+ vesicle->nucleus_center[0]-=vesicle->cm[0];
+ vesicle->nucleus_center[1]-=vesicle->cm[1];
+ vesicle->nucleus_center[2]-=vesicle->cm[2];
+
+ vesicle->cm[0]=0.0;
+ vesicle->cm[1]=0.0;
+ vesicle->cm[2]=0.0;
+
+ for(i=0;i<vesicle->tlist->n;i++){
+ triangle_normal_vector(vesicle->tlist->tria[i]);
+ }
+
+
return TS_SUCCESS;
}
-ts_bool cell_ocupation(ts_vesicle *vesicle){
- ts_uint i,j,cellidx;
- ts_double shift;
- ts_double dcell;
- shift=(ts_double) vesicle->clist.ncmax[0]/2;
- dcell=1.0/(1.0 + vesicle->stepsize);
- ts_uint ncx, ncy,ncz;
+ts_bool cell_occupation(ts_vesicle *vesicle){
+ ts_uint i,j,cellidx, n=vesicle->vlist->n;
- cell_list_cell_ocupation_clear(&vesicle->clist);
- for(i=0;i<vesicle->vlist.n;i++){
-
- cellidx=vertex_self_avoidance(vesicle, &vesicle->vlist.vertex[i]);
- vesicle->vlist.vertex[i].cell=&(vesicle->clist.cell[cellidx]);
+ cell_list_cell_occupation_clear(vesicle->clist);
+ for(i=0;i<n;i++){
+ cellidx=vertex_self_avoidance(vesicle, vesicle->vlist->vtx[i]);
+// already done in cell_add_vertex
+// vesicle->vlist->vtx[i]->cell=vesicle->clist->cell[cellidx];
- cell_add_vertex(&vesicle->clist.cell[cellidx],&vesicle->vlist.vertex[i]);
-
- // if(ncx > vesicle->clist.ncmax[0]) vesicle->clist.ncmax[0]=ncx;
- // if(ncy > vesicle->clist.ncmax[1]) vesicle->clist.ncmax[1]=ncy;
- // if(ncz > vesicle->clist.ncmax[2]) vesicle->clist.ncmax[2]=ncz;
+ cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->vlist->vtx[i]);
}
-
-/* This was already done in previous for loop.... Have I gained some time?
-
-
- for(i=0;i<vesicle->clist.ncmax[0]*vesicle->clist.ncmax[1]*vesicle->clist.ncmax[2];i++){
- vesicle->clist.cell[i].nvertex=0;
- for(j=0;j<vesicle->vlist.n;j++){
- //add_vertextocell;
- //add_vertextomonomer;
- }
+//Add all polymers to cells
+ for(i=0;i<vesicle->poly_list->n;i++){
+ for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
+ cellidx=vertex_self_avoidance(vesicle, vesicle->poly_list->poly[i]->vlist->vtx[j]);
+ cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->poly_list->poly[i]->vlist->vtx[j]);
+ }
}
+//Add all filaments to cells
+ for(i=0;i<vesicle->filament_list->n;i++){
+ for(j=0;j<vesicle->filament_list->poly[i]->vlist->n;j++){
+ cellidx=vertex_self_avoidance(vesicle, vesicle->filament_list->poly[i]->vlist->vtx[j]);
+ cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->filament_list->poly[i]->vlist->vtx[j]);
+ }
+ }
+
-*/
return TS_SUCCESS;
}
--
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