From dc77e8ef10378188ee0a9657cedd1b7991a0a29f Mon Sep 17 00:00:00 2001
From: Samo Penic <samo@CAE-linux.(none)>
Date: Wed, 09 Apr 2014 21:27:38 +0000
Subject: [PATCH] Added spherical harmonics as-is into rbc

---
 src/tape |   47 ++++++++++++++++++++++++++++++++++++-----------
 1 files changed, 36 insertions(+), 11 deletions(-)

diff --git a/src/tape b/src/tape
index 55973b6..833acaa 100644
--- a/src/tape
+++ b/src/tape
@@ -1,18 +1,40 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
 nshell=17
-# dmax is the square of the bond length 
-dmax=1.67
-# bending rigidity of the membrane 
-xk0=25.0
-# max step size 
+# dmax is the max. bond length (in units l_min)
+dmax=1.7
+# dmin_interspecies in the min. dist. between different vertex species (in units l_min)
+dmin_interspecies=1.2
+# bending rigidity of the membrane (in units kT)
+xk0=10.0
+# max step size (in units l_min)
 stepsize=0.15
 
-####### Polymer definitions ###########
+# Pressure calculations
+# (pswitch=1: calc. p*dV energy contribution)
+pswitch = 1
+# pressure difference: p_inside - p_outside (in units kT/l_min^3):
+pressure=-1.0
+
+####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=10
-# nmono is a number of monomers in each polymere
-nmono=15
+npoly=0
+# nmono is a number of monomers in each polymer
+nmono=10
+# Spring constant between monomers of the polymer
+k_spring=800
+
+####### Filament (inside the vesicle) definitions ###########
+# nfil is a number of filaments inside the vesicle
+nfil=2
+# nfono is a number of monomers in each filament
+nfono=300
+# Persistence lenght of the filaments (in units l_min)
+xi=5000
+
+####### Nucleus (inside the vesicle) ###########
+# Radius of an impenetrable hard sphere inside the vesicle
+R_nucleus=5
 
 #######  Cell definitions ############
 nxmax=60
@@ -24,11 +46,14 @@
 #how many MC sweeps between subsequent records of states to disk
 mcsweeps=10
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
-inititer=1
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=100
+iterations=2000
 
 
+###### Spherical harmonics ###########
+spherical_harmonics_coefficients=21
+
 #shut up if we are using cluster!!!
 quiet=false
 

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