From dba66b4f8a25cb7eb18de5f7ffca97e179d7a5d9 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 19 Oct 2019 11:45:15 +0000
Subject: [PATCH] Moved compression/decompression routines to separate file

---
 src/io.h |   54 ++++++------------------------------------------------
 1 files changed, 6 insertions(+), 48 deletions(-)

diff --git a/src/io.h b/src/io.h
index 11555f3..16bacfb 100644
--- a/src/io.h
+++ b/src/io.h
@@ -27,53 +27,13 @@
 
 
 
-/** @brief Prints the position of vertices for the whole list
- *  
- *  The function is meant more or less as a debug tool, but can be used in production
- *  environment aswell.
- *  the output is in form of idx: x y z
- *  	@param *vlist is a structure holding information on vertex list.
- *	@returns TS_SUCCESS on successful execution, TS_FAIL otherwise.
-*/
-
-ts_bool print_vertex_list(ts_vertex_list *vlist);
-
-/** @brief Prints the neighbours of all the vertices
- *  
- *  The function is meant more or less as a debug tool, but can be used in production
- *  environment aswell.
- *  the output is in form of idx(number of neighbours): (x1,y1,z1) (x2,y2,z2) ...
- *  	@param *vlist is a structure holding information on vertex list.
- *	@returns TS_SUCCESS on successful execution, TS_FAIL otherwise.
-*/
-ts_bool print_vertex_neighbours(ts_vertex_list *vlist);
-
-
-/** @brief Function outputs the vetex list file to comply to old fortran format
- *  
- *  	@param *vlist is a list of vertices
- *  	@param *filename is a name of the output file to be created (note that if the file already
- *  exists it will be overwritten.
- */
-ts_bool write_vertex_fcompat_file(ts_vertex_list *vlist,ts_char *filename);
-ts_bool fprint_vertex_list(FILE *fh,ts_vertex_list *vlist);
-ts_bool fprint_tristar(FILE *fh, ts_vesicle *vesicle);
-ts_bool fprint_triangle_list(FILE *fh, ts_vesicle *vesicle);
-ts_bool fprint_vertex_data(FILE *fh,ts_vertex_list *vlist);
-ts_bool fprint_bonds(FILE *fh,ts_vesicle *vesicle);
-ts_bool write_dout_fcompat_file(ts_vesicle *vesicle, ts_char *filename);
-ts_bool read_tape_fcompat_file(ts_vesicle *vesicle, ts_char *filename);
-
-
-/** @brief Outputs file in vtk format, compatible with paraview.
+/** @brief Outputs file in newer vtk xml format, compatible with paraview.
  *
- *	@param *vlist is a list of vertices
- *	@param *filename is a name of the output file. If exists, it will be overwritten
- *	@param *text is a description line (max. 255 characters) to be included in the file
+ *	@param *vesicle is a list of vertices
+ *	@param *timestepno is a timestep number. Output file will be timestep_XXXXXX.vtu
+ *	@param *cstlist TO BE DOCUMENTED
  */
-ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
-ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
-ts_bool write_master_xml_file(ts_char *filename);
+ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno, ts_cluster_list *cstlist);
 ts_bool write_pov_file(ts_vesicle *vesicle, char *filename);
 
 ts_tape *parsetape(char *filename);
@@ -81,7 +41,5 @@
 ts_bool tape_free(ts_tape *tape);
 ts_bool getcmdline_tape(cfg_t *cfg, char *opts);
 ts_bool cmdline_to_tape(cfg_t *cfg, char *key, char *val);
-
-ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
-ts_vesicle *restore_state(ts_uint *iteration);
+ts_bool print_help(FILE *fd);
 #endif

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