From d9cb01f2bbcaf704b11d7d8c926f2634c04db928 Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Mon, 10 Mar 2014 11:12:11 +0000
Subject: [PATCH] added assigning new values to restore from dump

---
 src/poly.c |    8 +++++---
 1 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/src/poly.c b/src/poly.c
index edab18f..2057db1 100644
--- a/src/poly.c
+++ b/src/poly.c
@@ -4,6 +4,7 @@
 #include"vertex.h"
 #include"bond.h"
 #include<math.h>
+#include"energy.h"
 
 ts_bool poly_assign_spring_const(ts_vesicle *vesicle){
 	ts_uint i;
@@ -30,6 +31,7 @@
 
 	for(i=0;i<poly->blist->n;i++){
 	poly->blist->bond[i]->bond_length=sqrt(vtx_distance_sq(poly->blist->bond[i]->vtx1,poly->blist->bond[i]->vtx2));
+	bond_energy(poly->blist->bond[i],poly);
 	}
 
 	return poly;
@@ -39,7 +41,7 @@
 ts_poly_list *init_poly_list(ts_uint n_poly, ts_uint n_mono, ts_vertex_list *vlist){
 	ts_poly_list *poly_list=(ts_poly_list *)calloc(1,sizeof(ts_poly_list));
 	poly_list->poly	= (ts_poly **)calloc(n_poly,sizeof(ts_poly *));
-	ts_uint i=0,j=0, idx;
+	ts_uint i=0,j=0; //idx;
 	ts_uint gvtxi;
 	ts_double xnorm,ynorm,znorm,normlength;
 
@@ -79,7 +81,7 @@
 	}
 
 		//index correction for polymeres. Important, since each vtx has to have unique id
-	idx=vlist->n;
+/*	idx=vlist->n;
 	for(i=0;i<n_poly;i++){
 		for(j=0;j<n_mono;j++,idx++){
 
@@ -87,7 +89,7 @@
 
 		}
 	}
-
+*/
 
 	return poly_list;
 }

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