From d7a113d890064e18aa9f4267c33ac71348c6ba98 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Mon, 04 Nov 2013 21:54:22 +0000
Subject: [PATCH] Changes in main loop. It allows setting inner, outer loop and initial mc sweeps to be discarded

---
 src/Makefile.am |   20 ++++++++++++++++----
 1 files changed, 16 insertions(+), 4 deletions(-)

diff --git a/src/Makefile.am b/src/Makefile.am
index c8e124d..1221acb 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,5 +1,17 @@
 trisurfdir=../
-trisurf_PROGRAMS=trisurf
-trisurf_SOURCES=general.c vertex.c bond.c main.c
-trisurf_LDFLAGS = -lm -lconfuse
-trisurf_CFLAGS = -Wall -g
+trisurf_PROGRAMS = trisurf
+trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c bondflip.c main.c
+#trisurf_LDFLAGS = -lm -lconfuse
+shdiscoverdir=../
+shdiscover_PROGRAMS= shdiscover
+shdiscover_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c shdiscover.c
+AM_CFLAGS = -Wall -Werror
+co_testdir=../
+co_test_PROGRAMS=co_test
+co_test_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c co_test.c frame.c bondflip.c
+spherical_trisurfdir=../
+spherical_trisurf_PROGRAMS = spherical_trisurf
+spherical_trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf.c sh.c bondflip.c
+spherical_trisurf_ffdir=../
+spherical_trisurf_ff_PROGRAMS = spherical_trisurf_ff
+spherical_trisurf_ff_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf_ff.c sh.c bondflip.c

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