From d43116b7d609fa9cabae4068d037c1af3a20dae8 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Thu, 08 Aug 2019 17:42:46 +0000
Subject: [PATCH] An attempt to fix polymer error while recreating vesicle from vtu.
---
src/main.c | 9 ++++++---
1 files changed, 6 insertions(+), 3 deletions(-)
diff --git a/src/main.c b/src/main.c
index 55c27ba..3f91f43 100644
--- a/src/main.c
+++ b/src/main.c
@@ -48,19 +48,20 @@
ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n");
ts_fprintf(stdout,"************************************************\n\n");
vesicle = parseDump(command_line_args.dump_from_vtk);
+// write_vertex_xml_file(vesicle,9999); // here you can test if restoration and rewritting results in the same dump file. Only the date od creation of dump file must differ.
tape = vesicle->tape;
int arguments_no;
FILE *fd=fopen(".status","r");
if(fd!=NULL){
arguments_no=fscanf(fd,"%u", &start_iteration);
if(arguments_no==0){
- ts_fprintf(stdout,"No information of start iteration in .status file");
+ ts_fprintf(stdout,"No information of start iteration in .status file\n");
}
fclose(fd);
- start_iteration++;
+ start_iteration++;
}
else
- ts_fprintf(stdout,"No .status file. The iteration count will start from 0");
+ ts_fprintf(stdout,"No .status file. The iteration count will start from 0\n");
/* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */
// tape=parsetape(command_line_args.tape_fullfilename);
// vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
@@ -126,6 +127,8 @@
}
}
//printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]);
+// write_vertex_xml_file(vesicle,0);
+// exit(1);
//write_vertex_xml_file(vesicle,1000);
run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
--
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