From d33abe246221255be91bacda79f5852b8c4ed8fd Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sun, 08 Dec 2013 17:47:21 +0000
Subject: [PATCH] Triangles are ordered in the bond now. Also kp and km are found as adjvtx. They are also ordered.

---
 src/Makefile.am |   24 ++++++++++++++++++++----
 1 files changed, 20 insertions(+), 4 deletions(-)

diff --git a/src/Makefile.am b/src/Makefile.am
index 9f199d7..10ae3c2 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,5 +1,21 @@
 trisurfdir=../
-trisurf_PROGRAMS=trisurf
-trisurf_SOURCES=general.c vertex.c bond.c triangle.c main.c
-trisurf_LDFLAGS = -lm -lconfuse
-trisurf_CFLAGS = -Wall -Werror
+trisurf_PROGRAMS = trisurf
+trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c bondflip.c main.c
+#trisurf_LDFLAGS = -lm -lconfuse
+shdiscoverdir=../
+shdiscover_PROGRAMS= shdiscover
+shdiscover_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c shdiscover.c
+AM_CFLAGS = -Wall -Werror
+co_testdir=../
+co_test_PROGRAMS=co_test
+co_test_SOURCES= general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c energy.c sh.c co_test.c frame.c bondflip.c
+spherical_trisurfdir=../
+spherical_trisurf_PROGRAMS = spherical_trisurf
+spherical_trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf.c sh.c bondflip.c
+spherical_trisurf_ffdir=../
+spherical_trisurf_ff_PROGRAMS = spherical_trisurf_ff
+spherical_trisurf_ff_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf_ff.c sh.c bondflip.c
+neigh_testdir=../
+neigh_test_PROGRAMS = neigh_test
+neigh_test_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c bondflip.c neigh_test.c
+

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