From d0cafa2d67b4765450deb5781b08f4241d9c4d3a Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Tue, 16 Feb 2016 14:59:04 +0000
Subject: [PATCH] changed the automake script

---
 src/vertex.c |   21 +++++++++++++++++++++
 1 files changed, 21 insertions(+), 0 deletions(-)

diff --git a/src/vertex.c b/src/vertex.c
index 38647aa..3ae9fd1 100644
--- a/src/vertex.c
+++ b/src/vertex.c
@@ -6,6 +6,14 @@
 #include "bond.h"
 #include<stdio.h>
 
+ts_bool vertex_list_assign_id(ts_vertex_list *vlist, ts_uint id){
+	ts_uint i;	
+	for(i=0;i<vlist->n;i++){
+		vlist->vtx[i]->id = id;
+	}
+	return TS_SUCCESS;
+}
+
 ts_vertex_list *init_vertex_list(ts_uint N){	
 	ts_int i;
     ts_vertex_list *vlist=(ts_vertex_list *)malloc(sizeof(ts_vertex_list));
@@ -191,6 +199,19 @@
     return TS_SUCCESS;
 }
 
+/** Calculates the triple product of vectors defined by vertices vtx1, vtx2 and vtx3, ($\mathrm{vtx}_1\cdot(\mathrm{vtx}_2\cross\mathrm{vtx}_3$):
+ *  \begin{vmatrix}
+ *  x_1 & y_1 & z_1 \\
+ *  x_2-x_1 & y_2-y_1 & z_2-z_1\\
+ *  x_3-x_1 & y_3-y_1 & z_3-z_1\\
+ *  \end{vmatrix}
+ *  where the vertices coordinates are denoted by corresponding vertex index number. Function is used to determine the orientation of area formed by triangle formed by the three given vertices.
+ *
+ *      @param vtx1 is first vertex, according to which the orientation is calculated
+ *      @param vtx2 is the second vertex
+ *      @param vtx3 is the third vertex
+ *      @returns directionality of the area of the triangle formed by vertices vtx1, vtx2 and vtx3. It is positive if vtx1, vtx2 and vtx3 are oriented counter-clockwise.
+*/
 inline ts_double vtx_direct(ts_vertex *vtx1, ts_vertex *vtx2, ts_vertex *vtx3){
     ts_double dX2=vtx2->x-vtx1->x;
     ts_double dY2=vtx2->y-vtx1->y;

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