From 6c3bb91fea92c5013507bdf4f5ac49e889e213ff Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Tue, 06 Oct 2015 12:07:39 +0000
Subject: [PATCH] Unkonown merge difference between different directories are merged together.

---
 src/bond.c |   12 ++++++++++++
 1 files changed, 12 insertions(+), 0 deletions(-)

diff --git a/src/bond.c b/src/bond.c
index af39532..ce255ca 100644
--- a/src/bond.c
+++ b/src/bond.c
@@ -29,11 +29,23 @@
 	blist->bond[blist->n - 1]->vtx1=vtx1;	
 	blist->bond[blist->n - 1]->vtx2=vtx2;
 	blist->bond[blist->n - 1]->tainted=0;
+	blist->bond[blist->n - 1]->idx=blist->n-1;
     //Should we calculate bond length NOW?
 	
 	return blist->bond[blist->n-1];
 }
 
+
+ts_bool bond_vector(ts_bond *bond){
+	
+	bond->x = bond->vtx1->x - bond->vtx2->x;
+	bond->y = bond->vtx1->y - bond->vtx2->y;
+	bond->z = bond->vtx1->z - bond->vtx2->z;
+
+	return TS_SUCCESS;	
+}
+
+
 ts_bool bond_list_free(ts_bond_list *blist){
     ts_uint i;
     for(i=0;i<blist->n;i++){

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