From cc95bd1ca5e69ce13766ca0acea11560531ed620 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Tue, 24 May 2016 08:01:55 +0000
Subject: [PATCH] From snapshots, raw tape configuration is extracted and written into tape file and not the rendered one

---
 src/tape |   32 ++++++++++++++++++++++++--------
 1 files changed, 24 insertions(+), 8 deletions(-)

diff --git a/src/tape b/src/tape
index dbaabdb..620a4a3 100644
--- a/src/tape
+++ b/src/tape
@@ -1,6 +1,6 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
-nshell=17
+nshell=10
 # dmax is the max. bond length (in units l_min)
 dmax=1.7
 # dmin_interspecies in the min. dist. between different vertex species (in units l_min)
@@ -14,7 +14,14 @@
 # (pswitch=1: calc. p*dV energy contribution)
 pswitch = 1
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
-pressure=-1.0
+pressure=-10.0
+
+#Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
+constvolswitch=0
+constvolprecision=1e-14
+
+#Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
+constareaswitch=2
 
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
@@ -26,16 +33,18 @@
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
-nfil=2
+nfil=0
 # nfono is a number of monomers in each filament
 nfono=300
 # Persistence lenght of the filaments (in units l_min)
-xi=5000
+xi=0
 
 ####### Nucleus (inside the vesicle) ###########
 # Radius of an impenetrable hard sphere inside the vesicle
-R_nucleus=5
-
+R_nucleus=0
+R_nucleusX=2.0
+R_nucleusY=6.0
+R_nucleusZ=2.0
 #######  Cell definitions ############
 nxmax=60
 nymax=60
@@ -44,13 +53,20 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=10
+#200000
+mcsweeps=2000
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
+#2
 inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=20
+#10000
+iterations=100
 
 
+###### Spherical harmonics ###########
+# If 0 then spherical harmonics are not calculated at all.
+spherical_harmonics_coefficients=21
+
 #shut up if we are using cluster!!!
 quiet=false
 

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