From c59e0b5643fcba7b95a0e47b3db9258af83d8603 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 19 Oct 2019 13:04:58 +0000
Subject: [PATCH] Decompression seem to work
---
src/initial_distribution.c | 10 ++++++----
1 files changed, 6 insertions(+), 4 deletions(-)
diff --git a/src/initial_distribution.c b/src/initial_distribution.c
index 143d9d3..87cfb68 100644
--- a/src/initial_distribution.c
+++ b/src/initial_distribution.c
@@ -43,6 +43,8 @@
vesicle=initial_distribution_dipyramid(tape->nshell,tape->ncxmax,tape->ncymax,tape->nczmax,tape->stepsize);
vesicle->tape=tape;
+ vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies;
+ vesicle->poly_list=init_poly_list(tape->npoly,tape->nmono, vesicle->vlist, vesicle);
set_vesicle_values_from_tape(vesicle);
initial_population_with_c0(vesicle,tape);
return vesicle;
@@ -59,7 +61,7 @@
vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies;
//Initialize grafted polymers (brush):
- vesicle->poly_list=init_poly_list(tape->npoly,tape->nmono, vesicle->vlist, vesicle);
+ //vesicle->poly_list=init_poly_list(tape->npoly,tape->nmono, vesicle->vlist, vesicle);
vesicle->spring_constant=tape->kspring;
poly_assign_spring_const(vesicle);
@@ -112,7 +114,7 @@
vesicle->sphHarmonics=NULL;
}
-
+ vesicle->tlist->a0=sqrt(3)/4*pow((vesicle->tape->dmax+1.0)/2.0,2);
return TS_SUCCESS;
}
@@ -121,7 +123,7 @@
ts_bool initial_population_with_c0(ts_vesicle *vesicle, ts_tape *tape){
int rndvtx,i,j;
if(tape->number_of_vertices_with_c0>0){
- ts_fprintf(stderr,"Setting values for spontaneous curvature as defined in tape\n");
+// ts_fprintf(stderr,"Setting values for spontaneous curvature as defined in tape\n");
j=0;
for(i=0;i<tape->number_of_vertices_with_c0;i++){
rndvtx=rand() % vesicle->vlist->n;
@@ -137,7 +139,7 @@
}
mean_curvature_and_energy(vesicle);
if(fabs(tape->w)>1e-16){ //if nonzero energy
- ts_fprintf(stderr,"Setting attraction between vertices with spontaneous curvature\n");
+// ts_fprintf(stderr,"Setting attraction between vertices with spontaneous curvature\n");
sweep_attraction_bond_energy(vesicle);
}
}
--
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