From e19e790e95f14ca69a7ce9c5e45d815fe21df36e Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 10 Jul 2012 12:33:43 +0000
Subject: [PATCH] It seems bondflip is fixed. Before 'for' loops I had to set j=0 in vertex.c and triangle.c in remove_neighbour
---
src/triangle.c | 228 +++++++++++++++++++++++++++++++++++++++++++++-----------
1 files changed, 183 insertions(+), 45 deletions(-)
diff --git a/src/triangle.c b/src/triangle.c
index 79a0ada..dc53487 100644
--- a/src/triangle.c
+++ b/src/triangle.c
@@ -4,6 +4,21 @@
#include "triangle.h"
#include<math.h>
+/** @brief Prepares the list for triangles.
+ *
+ * Create empty list for holding the information on triangles. Triangles are
+ * added later on with triangle_add().
+ * Returns pointer to the tlist datastructure it has created. This pointer must
+ * be assigned to some variable or it will be lost.
+ *
+ *
+ * Example of usage:
+ * ts_triangle_list *tlist;
+ * tlist=triangle_data_free();
+ *
+ * Initalized data structure for holding the information on triangles.
+ *
+ */
ts_triangle_list *init_triangle_list(){
ts_triangle_list *tlist=(ts_triangle_list *)malloc(sizeof(ts_triangle_list));
tlist->n = 0;
@@ -11,7 +26,27 @@
return tlist;
}
-
+/** @brief Add the triangle to the triangle list and create necessary data
+ * structures.
+ *
+ * Add the triangle ts_triangle with ts_triangle_data to the ts_triangle_list.
+ * The triangle list is resized, the ts_triangle is allocated and
+ * ts_triangle_data is allocated and zeroed. The function receives 4 arguments:
+ * ts_triangle_list *tlist as list of triangles and 3 ts_vertex *vtx as
+ * vertices that are used to form a triangle. Returns a pointer to newly
+ * created triangle. This pointer doesn't need assigning, since it is
+ * referenced by triangle list.
+ *
+ * WARNING: Function can be accelerated a bit by removing the NULL checks.
+ * However the time gained by removal doesn't justify the time spent by
+ * debugging stupid NULL pointers.
+ *
+ * Example of usage:
+ * triangle_add(tlist, vlist->vtx[1], vlist->vtx[2], vlist->vtx[3]);
+ *
+ * Creates a triangle with given vertices and puts it into the list.
+ *
+ */
ts_triangle *triangle_add(ts_triangle_list *tlist, ts_vertex *vtx1, ts_vertex *vtx2, ts_vertex *vtx3){
if(vtx1==NULL || vtx2==NULL || vtx3==NULL){
return NULL;
@@ -22,44 +57,88 @@
tlist->tria[tlist->n-1]=(ts_triangle *)calloc(1,sizeof(ts_triangle));
if(tlist->tria[tlist->n-1]==NULL) fatal("Cannot reallocate memory for additional ts_triangle.",5);
- tlist->tria[tlist->n-1]->data=(ts_triangle_data *)calloc(1,sizeof(ts_triangle_data));
+ // tlist->tria[tlist->n-1]->data=(ts_triangle_data *)calloc(1,sizeof(ts_triangle_data));
//NOW insert vertices!
tlist->tria[tlist->n - 1]->idx=tlist->n-1;
- tlist->tria[tlist->n - 1]->data->vertex[0]=vtx1;
- tlist->tria[tlist->n - 1]->data->vertex[1]=vtx2;
- tlist->tria[tlist->n - 1]->data->vertex[2]=vtx3;
+ tlist->tria[tlist->n - 1]->vertex[0]=vtx1;
+ tlist->tria[tlist->n - 1]->vertex[1]=vtx2;
+ tlist->tria[tlist->n - 1]->vertex[2]=vtx3;
return tlist->tria[tlist->n-1];
}
+/** @brief Add the neigbour to triangles.
+ *
+ * Add the neigbour to the list of neighbouring triangles. The
+ * neighbouring triangles are those, who share two vertices. Function resizes
+ * the list and adds the pointer to neighbour. It receives two arguments of
+ * ts_triangle type. It then adds second triangle to the list of first
+ * triangle, but not the opposite. Upon
+ * success it returns TS_SUCCESS, upon detecting NULL pointers
+ * returns TS_FAIL and it FATALY ends when the data structure
+ * cannot be resized.
+ *
+ *
+ * WARNING: Function can be accelerated a bit by removing the NULL checks.
+ * However the time gained by removal doesn't justify the time spent by
+ * debugging stupid NULL pointers.
+ *
+ * Example of usage:
+ * triangle_remove_neighbour(tlist->tria[3], tlist->tria[4]);
+ *
+ * Triangles 3 and 4 are not neighbours anymore.
+ *
+ */
ts_bool triangle_add_neighbour(ts_triangle *tria, ts_triangle *ntria){
if(tria==NULL || ntria==NULL) return TS_FAIL;
/*TODO: check if the neighbour already exists! Now there is no such check
* because of the performance issue. */
- tria->data->neigh_no++;
- tria->data->neigh=realloc(tria->data->neigh,tria->data->neigh_no*sizeof(ts_triangle *));
- if(tria->data->neigh == NULL)
+ tria->neigh_no++;
+ tria->neigh=realloc(tria->neigh,tria->neigh_no*sizeof(ts_triangle *));
+ if(tria->neigh == NULL)
fatal("Reallocation of memory failed during insertion of triangle neighbour in triangle_add_neighbour",3);
- tria->data->neigh[tria->data->neigh_no-1]=ntria;
-
+ tria->neigh[tria->neigh_no-1]=ntria;
+
+
/* we repeat the procedure for the neighbour */
- ntria->data->neigh_no++;
+/* ntria->data->neigh_no++;
ntria->data->neigh=realloc(ntria->data->neigh,ntria->data->neigh_no*sizeof(ts_triangle *));
if(ntria->data->neigh == NULL)
fatal("Reallocation of memory failed during insertion of triangle neighbour in triangle_add_neighbour",3);
ntria->data->neigh[ntria->data->neigh_no-1]=tria;
+*/
return TS_SUCCESS;
}
-
+/** @brief Remove the neigbours from triangle.
+ *
+ * Removes the neigbour from the list of neighbouring triangles. The
+ * neighbouring triangles are those, who share two vertices. Function resizes
+ * the list and deletes the pointer to neighbour. It receives two arguments of
+ * ts_triangle type. It then removes eachother form eachother's list. Upon
+ * success it returns TS_SUCCESS, upon failure to find the triangle in the
+ * neighbour list returns TS_FAIL and it FATALY ends when the datastructure
+ * cannot be resized.
+ *
+ * WARNING: The function doesn't check whether the pointer is NULL or invalid. It is the
+ * job of programmer to make sure the pointer is valid.
+ *
+ * WARNING: Function is slow. Do not use it often!
+ *
+ * Example of usage:
+ * triangle_remove_neighbour(tlist->tria[3], tlist->tria[4]);
+ *
+ * Triangles 3 and 4 are not neighbours anymore.
+ *
+ */
ts_bool triangle_remove_neighbour(ts_triangle *tria, ts_triangle *ntria){
ts_uint i,j=0;
if(tria==NULL || ntria==NULL) return TS_FAIL;
- for(i=0;i<tria->data->neigh_no;i++){
- if(tria->data->neigh[i]!=ntria){
- tria->data->neigh[j]=tria->data->neigh[i];
+ for(i=0;i<tria->neigh_no;i++){
+ if(tria->neigh[i]!=ntria){
+ tria->neigh[j]=tria->neigh[i];
j++;
}
}
@@ -67,15 +146,17 @@
return TS_FAIL;
//fatal("In triangle_remove_neighbour: Specified neighbour does not exist for given triangle",3);
}
- tria->data->neigh_no--;
- tria->data->neigh=(ts_triangle **)realloc(tria->data->neigh,tria->data->neigh_no*sizeof(ts_triangle *));
- if(tria->data->neigh == NULL){
+ tria->neigh_no--;
+// fprintf(stderr,"*** tria_number=%d\n",tria->neigh_no);
+ tria->neigh=(ts_triangle **)realloc(tria->neigh,tria->neigh_no*sizeof(ts_triangle *));
+ if(tria->neigh == NULL){
fatal("Reallocation of memory failed during removal of vertex neighbour in triangle_remove_neighbour",100);
}
/* we repeat the procedure for neighbour */
- for(i=0;i<ntria->data->neigh_no;i++){
- if(ntria->data->neigh[i]!=tria){
- ntria->data->neigh[j]=ntria->data->neigh[i];
+ j=0;
+ for(i=0;i<ntria->neigh_no;i++){
+ if(ntria->neigh[i]!=tria){
+ ntria->neigh[j]=ntria->neigh[i];
j++;
}
}
@@ -83,29 +164,52 @@
return TS_FAIL;
//fatal("In triangle_remove_neighbour: Specified neighbour does not exist for given triangle",3);
}
- ntria->data->neigh_no--;
- ntria->data->neigh=(ts_triangle **)realloc(ntria->data->neigh,ntria->data->neigh_no*sizeof(ts_triangle *));
- if(ntria->data->neigh == NULL){
+ ntria->neigh_no--;
+// fprintf(stderr,"*** ntria_number=%d\n",ntria->neigh_no);
+ ntria->neigh=(ts_triangle **)realloc(ntria->neigh,ntria->neigh_no*sizeof(ts_triangle *));
+ if(ntria->neigh == NULL){
fatal("Reallocation of memory failed during removal of vertex neighbour in triangle_remove_neighbour",100);
}
return TS_SUCCESS;
}
+
+/** @brief Calculates normal vector of the triangle.
+
+ *
+ * Calculate normal vector of the triangle (xnorm, ynorm and znorm) and stores
+ * information in underlying ts_triangle_data data_structure.
+ *
+ * Function receives one argument of type ts_triangle. It should be corectly
+ * initialized with underlying data structure of type ts_triangle_data. the
+ * result is stored in triangle->data->xnorm, triangle->data->ynorm,
+ * triangle->data->znorm. Returns TS_SUCCESS on completion.
+ *
+ * NOTE: Function uses math.h library. pow function implementation is selected
+ * accordind to the setting in genreal.h
+ *
+ * Example of usage:
+ * triangle_normal_vector(tlist->tria[3]);
+ *
+ * Computes normals and stores information into tlist->tria[3]->xnorm,
+ * tlist->tria[3]->ynorm, tlist->tria[3]->znorm.
+ *
+ */
ts_bool triangle_normal_vector(ts_triangle *tria){
ts_double x21,x31,y21,y31,z21,z31,xden;
- x21=tria->data->vertex[1]->data->x - tria->data->vertex[0]->data->x;
- x31=tria->data->vertex[2]->data->x - tria->data->vertex[0]->data->x;
- y21=tria->data->vertex[1]->data->y - tria->data->vertex[0]->data->y;
- y31=tria->data->vertex[2]->data->y - tria->data->vertex[0]->data->y;
- z21=tria->data->vertex[1]->data->z - tria->data->vertex[0]->data->z;
- z31=tria->data->vertex[2]->data->z - tria->data->vertex[0]->data->z;
+ x21=tria->vertex[1]->x - tria->vertex[0]->x;
+ x31=tria->vertex[2]->x - tria->vertex[0]->x;
+ y21=tria->vertex[1]->y - tria->vertex[0]->y;
+ y31=tria->vertex[2]->y - tria->vertex[0]->y;
+ z21=tria->vertex[1]->z - tria->vertex[0]->z;
+ z31=tria->vertex[2]->z - tria->vertex[0]->z;
- tria->data->xnorm=y21*z31 - z21*y31;
- tria->data->ynorm=z21*x31 - x21*z31;
- tria->data->znorm=x21*y31 - y21*x31;
- xden=tria->data->xnorm*tria->data->xnorm +
- tria->data->ynorm*tria->data->ynorm +
- tria->data->znorm*tria->data->znorm;
+ tria->xnorm=y21*z31 - z21*y31;
+ tria->ynorm=z21*x31 - x21*z31;
+ tria->znorm=x21*y31 - y21*x31;
+ xden=tria->xnorm*tria->xnorm +
+ tria->ynorm*tria->ynorm +
+ tria->znorm*tria->znorm;
#ifdef TS_DOUBLE_DOUBLE
xden=sqrt(xden);
#endif
@@ -115,23 +219,57 @@
#ifdef TS_DOUBLE_LONGDOUBLE
xden=sqrtl(xden);
#endif
- tria->data->xnorm=tria->data->xnorm/xden;
- tria->data->ynorm=tria->data->ynorm/xden;
- tria->data->znorm=tria->data->znorm/xden;
+ tria->xnorm=tria->xnorm/xden;
+ tria->ynorm=tria->ynorm/xden;
+ tria->znorm=tria->znorm/xden;
+
+/* Here it is an excellent point to recalculate volume of the triangle and
+ * store it into datastructure. Volume is required at least by constant volume
+ * calculation of vertex move and bondflip and spherical harmonics. */
+ tria->volume=(tria->vertex[0]->x+ tria->vertex[1]->x + tria->vertex[2]->x) * tria->xnorm +
+ (tria->vertex[0]->y+ tria->vertex[1]->y + tria->vertex[2]->y) * tria->ynorm +
+ (tria->vertex[0]->z+ tria->vertex[1]->z + tria->vertex[2]->z) * tria->znorm;
+ tria->volume=-xden*tria->volume/18.0;
+/* Also, area can be calculated in each triangle */
+ tria->area=xden/2;
+
+
return TS_SUCCESS;
}
-ts_bool triangle_data_free(ts_triangle_data *data){
- if(data->neigh!=NULL) free(data->neigh);
- free(data);
- return TS_SUCCESS;
-}
+
+
+
+/** @brief Frees the memory allocated for data structure of triangle list
+ * (ts_triangle_list)
+ *
+ * Function frees the memory of ts_triangle_list previously allocated. It
+ * accepts one argument, the address of data structure. It destroys all
+ * ts_triangle's in the list with underlying data (by calling
+ * triangle_data_free()), and the list itself.
+ *
+ * Should be used eveytime the deletion of triangle list (created by
+ * init_triangle_list() and altered by add_triangle() or remove_triangle()) is desired.
+ *
+ * WARNING: The function doesn't check whether the pointer is NULL or invalid. It is the
+ * job of programmer to make sure the pointer is valid.
+ *
+ * WARNING: Careful when destroying triangle lists. There could be pointers to
+ * that information remaining in structures like vertex_data. This pointers
+ * will be rendered invalid by this operation and should not be used anymore.
+ *
+ * Example of usage:
+ * triangle_list_free(tlist);
+ *
+ * Clears all the information on triangles.
+ *
+ */
ts_bool triangle_list_free(ts_triangle_list *tlist){
ts_uint i;
for(i=0;i<tlist->n;i++){
- triangle_data_free(tlist->tria[i]->data);
+ if(tlist->tria[i]->neigh!=NULL) free(tlist->tria[i]->neigh);
free(tlist->tria[i]);
}
free(tlist->tria);
--
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