From e19e790e95f14ca69a7ce9c5e45d815fe21df36e Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 10 Jul 2012 12:33:43 +0000
Subject: [PATCH] It seems bondflip is fixed. Before 'for' loops I had to set j=0 in vertex.c and triangle.c in remove_neighbour
---
src/main.c | 34 ++++++++++++++++++++++------------
1 files changed, 22 insertions(+), 12 deletions(-)
diff --git a/src/main.c b/src/main.c
index c402ebf..ca9ed07 100644
--- a/src/main.c
+++ b/src/main.c
@@ -30,26 +30,27 @@
retval=vtx_add_cneighbour(blist,vlist->vtx[1],vlist->vtx[0]);
if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n");
-retval=vtx_add_cneighbour(blist,vlist->vtx[0],vlist->vtx[1]);
+retval=vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");
-
-retval=vtx_remove_neighbour(vlist->vtx[0],vlist->vtx[1]);
+fprintf(stderr,"Was here");
+retval=vtx_remove_neighbour(vlist->vtx[1],vlist->vtx[0]);
vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
+fprintf(stderr,"Was here too!\n");
-vlist->vtx[0]->data->x=1.0;
-vlist->vtx[0]->data->x=1.1;
+vlist->vtx[0]->x=1.0;
+vlist->vtx[0]->x=1.1;
vlist1=vertex_list_copy(vlist);
bond_add(blist, vlist->vtx[1],vlist->vtx[0]);
triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
-printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
cell_add_vertex(clist->cell[0], vlist->vtx[0]);
-printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex);
-printf("Cell idx=1 has vertex[0] has x coordinate=%e\n",clist->cell[0]->data->vertex[0]->data->x);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
+printf("Cell idx=1 has vertex[0] has x coordinate=%e\n",clist->cell[0]->vertex[0]->x);
cell_list_cell_occupation_clear(clist);
-printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
cell_add_vertex(clist->cell[0], vlist->vtx[0]);
@@ -61,13 +62,22 @@
vtx_list_free(vlist1);
printf("Tests complete.\n");
vesicle=initial_distribution_dipyramid(17,60,60,60,0.15);
+//parsetape(vesicle,&i);
+
+//these four must come from parsetype!
+vesicle->dmax=1.67*1.67;
+vesicle->stepsize=0.15;
+vesicle->clist->max_occupancy=8;
+vesicle->bending_rigidity=25.0;
+fprintf(stderr,"xk=%f",vesicle->bending_rigidity);
centermass(vesicle);
cell_occupation(vesicle);
-
-for(i=0;i<100;i++){
+for(i=0;i<10000;i++){
single_timestep(vesicle);
-write_vertex_xml_file(vesicle,i);
+if(i%100==0){
+write_vertex_xml_file(vesicle,i/100);
+}
}
write_master_xml_file("test.pvd");
write_dout_fcompat_file(vesicle,"dout");
--
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