From e19e790e95f14ca69a7ce9c5e45d815fe21df36e Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 10 Jul 2012 12:33:43 +0000
Subject: [PATCH] It seems bondflip is fixed. Before 'for' loops I had to set j=0 in vertex.c and triangle.c in remove_neighbour

---
 src/frame.c |   26 +++++---------------------
 1 files changed, 5 insertions(+), 21 deletions(-)

diff --git a/src/frame.c b/src/frame.c
index faa1db8..63a4f7b 100644
--- a/src/frame.c
+++ b/src/frame.c
@@ -9,9 +9,9 @@
     vesicle->cm[1]=0;
     vesicle->cm[2]=0;
     for(i=0;i<n;i++){
-        vesicle->cm[0]+=vtx[i]->data->x;
-        vesicle->cm[1]+=vtx[i]->data->y;
-        vesicle->cm[2]+=vtx[i]->data->z; 
+        vesicle->cm[0]+=vtx[i]->x;
+        vesicle->cm[1]+=vtx[i]->y;
+        vesicle->cm[2]+=vtx[i]->z; 
     } 
     vesicle->cm[0]/=(ts_float)n;
     vesicle->cm[1]/=(ts_float)n;
@@ -25,33 +25,17 @@
     ts_double dcell;
     shift=(ts_double) vesicle->clist->ncmax[0]/2;
     dcell=1.0/(1.0 + vesicle->stepsize);
+    //`fprintf(stderr, "Bil sem tu\n"); 
 
     cell_list_cell_occupation_clear(vesicle->clist);
     for(i=0;i<n;i++){
     cellidx=vertex_self_avoidance(vesicle, vesicle->vlist->vtx[i]);
-    vesicle->vlist->vtx[i]->data->cell=vesicle->clist->cell[cellidx];
+    vesicle->vlist->vtx[i]->cell=vesicle->clist->cell[cellidx];
 
     cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->vlist->vtx[i]);
 
-  //  if(ncx > vesicle->clist.ncmax[0]) vesicle->clist.ncmax[0]=ncx;
-  //  if(ncy > vesicle->clist.ncmax[1]) vesicle->clist.ncmax[1]=ncy;
-  //  if(ncz > vesicle->clist.ncmax[2]) vesicle->clist.ncmax[2]=ncz;
     }
     //fprintf(stderr, "Bil sem tu\n"); 
-
-
-/* This was already done in previous for loop.... Have I gained some time? 
-
-
-    for(i=0;i<vesicle->clist.ncmax[0]*vesicle->clist.ncmax[1]*vesicle->clist.ncmax[2];i++){
-        vesicle->clist.cell[i].nvertex=0;
-        for(j=0;j<vesicle->vlist.n;j++){
-            //add_vertextocell;
-            //add_vertextomonomer;
-        }
-    }
-
-*/
 	if(dcell);
 	if(shift);
     return TS_SUCCESS;

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