From bd826de2f539f2e48c8c01d2d7f9f34c7e97104a Mon Sep 17 00:00:00 2001 From: Samo Penic <samo.penic@gmail.com> Date: Fri, 13 May 2016 07:43:27 +0000 Subject: [PATCH] Fix in trisurf output, inhibiting print of successful reconstruction. Multiple fixes and improvements in python module. Added symlinking of tapes into the running directories and dumping tapes from snapshots into tape files. --- src/tape | 10 ++++++---- 1 files changed, 6 insertions(+), 4 deletions(-) diff --git a/src/tape b/src/tape index 034c8a4..baaac60 100644 --- a/src/tape +++ b/src/tape @@ -1,6 +1,6 @@ ####### Vesicle definitions ########### # nshell is a number of divisions of dipyramid -nshell=17 +nshell=5 # dmax is the max. bond length (in units l_min) dmax=1.7 # dmin_interspecies in the min. dist. between different vertex species (in units l_min) @@ -16,14 +16,16 @@ # pressure difference: p_inside - p_outside (in units kT/l_min^3): pressure=0.0 -#Constant volume constraint (0 disable constant volume, 1 enable) -constvolswitch=1 +#Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol) +constvolswitch=2 constvolprecision=1e-14 +#Constant area constraint (0 disable constant area, 2 enable constant area with epsarea) +constareaswitch=2 ####### Polymer (brush) definitions ########### # npoly is a number of polymers attached to npoly distinct vertices on vesicle -npoly=0 +npoly=2 # nmono is a number of monomers in each polymer nmono=10 # Spring constant between monomers of the polymer -- Gitblit v1.9.3