From bd826de2f539f2e48c8c01d2d7f9f34c7e97104a Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 13 May 2016 07:43:27 +0000
Subject: [PATCH] Fix in trisurf output, inhibiting print of successful reconstruction. Multiple fixes and improvements in python module. Added symlinking of tapes into the running directories and dumping tapes from snapshots into tape files.
---
src/main.c | 30 ++++++++++++++++++++++++++----
1 files changed, 26 insertions(+), 4 deletions(-)
diff --git a/src/main.c b/src/main.c
index 8a3a550..df7d6fa 100644
--- a/src/main.c
+++ b/src/main.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
#include<stdio.h>
#include<math.h>
#include<stdlib.h>
@@ -14,7 +15,10 @@
#include "poly.h"
#include "sh.h"
#include "shcomplex.h"
+#include "dumpstate.h"
+#include "restore.h"
+#include <fcntl.h>
/** Entrance function to the program
* @param argv is a number of parameters used in program call (including the program name
* @param argc is a pointer to strings (character arrays) which holds the arguments
@@ -26,20 +30,38 @@
ts_tape *tape;
ts_uint start_iteration=0;
force_from_tape=0;
+ /* create lock file */
+ createPidFile("ts_trisurf",".lock",0);
parse_args(argv,argc); // sets global variable command_line_args (defined in io.h)
+ ts_fprintf(stdout,"TRISURF-NG v. %s, compiled on: %s %s.\n", TS_VERSION, __DATE__, __TIME__);
+ ts_fprintf(stdout,"Programming done by: Samo Penic and Miha Fosnaric\n");
+ ts_fprintf(stdout,"Released under terms of GPLv3\n");
ts_fprintf(stdout,"Starting program...\n\n");
- if(command_line_args.force_from_tape){
+// vesicle = parseDump("timestep_000000.vtu");
+// run_simulation(vesicle, vesicle->tape->mcsweeps, vesicle->tape->inititer, vesicle->tape->iterations, 1);
+
+ if(command_line_args.dump_from_vtk[0]!=0){
+ ts_fprintf(stdout,"************************************************\n");
+ ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n");
+ ts_fprintf(stdout,"************************************************\n\n");
+ vesicle = parseDump(command_line_args.dump_from_vtk);
+ tape = vesicle->tape;
+/* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */
+// tape=parsetape(command_line_args.tape_fullfilename);
+ // vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
+ }
+ else if(command_line_args.force_from_tape){
ts_fprintf(stdout,"************************************************\n");
ts_fprintf(stdout,"**** Generating initial geometry from tape *****\n");
ts_fprintf(stdout,"************************************************\n\n");
- tape=parsetape("tape");
+ tape=parsetape(command_line_args.tape_fullfilename);
vesicle=create_vesicle_from_tape(tape);
} else {
ts_fprintf(stdout,"**********************************************************************\n");
ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n");
ts_fprintf(stdout,"**********************************************************************\n\n");
- tape=parsetape("tape");
+ tape=parsetape(command_line_args.tape_fullfilename);
vesicle=restore_state(&start_iteration);
if(vesicle==NULL){
ts_fprintf(stderr, "Dump file does not exist or is not a regular file! Did you mean to invoke trisurf with --force-from-tape option?\n\n");
@@ -90,7 +112,7 @@
}
run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
- write_master_xml_file("test.pvd");
+ write_master_xml_file(command_line_args.output_fullfilename);
write_dout_fcompat_file(vesicle,"dout");
vesicle_free(vesicle);
tape_free(tape);
--
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