From bcf4557ddd61890f130247430267feac5b05c5b7 Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Fri, 21 Mar 2014 09:39:35 +0000
Subject: [PATCH] Filament inside the vesicle added and debugged. Testing time...

---
 src/tape |   20 ++++++++++++++++----
 1 files changed, 16 insertions(+), 4 deletions(-)

diff --git a/src/tape b/src/tape
index bd02323..5d93639 100644
--- a/src/tape
+++ b/src/tape
@@ -14,13 +14,25 @@
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
 pressure=0.0
 
-####### Polymer definitions ###########
+####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
 npoly=0
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
 k_spring=800
+
+####### Filament (inside the vesicle) definitions ###########
+# nfil is a number of filaments inside the vesicle
+nfil=1
+# nfono is a number of monomers in each filament
+nfono=30
+# Persistence lenght of the filaments (in units l_min)
+xi=0
+
+####### Nucleus (inside the vesicle) ###########
+# Radius of an impenetrable hard sphere inside the vesicle
+R_nucleus=5
 
 #######  Cell definitions ############
 nxmax=60
@@ -30,11 +42,11 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=5000
+mcsweeps=300
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
-inititer=1
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=1000
+iterations=30
 
 
 #shut up if we are using cluster!!!

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