From bb207499ba467145aabb379b841094afd6d695c0 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sun, 15 May 2016 10:13:44 +0000
Subject: [PATCH] Fix in reading .status file.
---
src/restore.c | 35 ++++++++++++++++++-----------------
1 files changed, 18 insertions(+), 17 deletions(-)
diff --git a/src/restore.c b/src/restore.c
index a3196bd..56e52b8 100644
--- a/src/restore.c
+++ b/src/restore.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
#include <stdio.h>
#include <string.h>
#include <stdlib.h>
@@ -16,7 +17,7 @@
#include "initial_distribution.h"
#include "io.h"
-ts_bool parseDump(char *dumpfname) {
+ts_vesicle *parseDump(char *dumpfname) {
xmlDocPtr doc;
xmlNodePtr cur, cur1,cur2;
ts_vesicle *vesicle=NULL;
@@ -54,12 +55,12 @@
cur2=cur1->xmlChildrenNode;
while(cur2!=NULL){
if ((!xmlStrcmp(cur2->name, (const xmlChar *)"Points"))){
- fprintf(stderr,"Found point data\n");
+ //fprintf(stderr,"Found point data\n");
if(vesicle!=NULL)
parseXMLVertexPosition(vesicle, doc, cur2);
}
if ((!xmlStrcmp(cur2->name, (const xmlChar *)"Cells"))){
- fprintf(stderr,"Found cell(Bonds) data\n");
+ //fprintf(stderr,"Found cell(Bonds) data\n");
if(vesicle!=NULL)
parseXMLBonds(vesicle, doc, cur2);
}
@@ -80,13 +81,13 @@
init_normal_vectors(vesicle->tlist);
mean_curvature_and_energy(vesicle);
-/* TODO: cells, polymeres, filaments, core, tape */
+/* TODO: filaments */
- fprintf(stderr,"Restoration completed\n");
- write_vertex_xml_file(vesicle,999);
- vesicle_free(vesicle);
- exit(0);
- return TS_SUCCESS;
+ ts_fprintf(stdout,"Restoration completed\n");
+// write_vertex_xml_file(vesicle,999);
+// vesicle_free(vesicle);
+// exit(0);
+ return vesicle;
}
ts_bool setGlobalTapeTXTfromTapeTag(xmlDocPtr doc, xmlNodePtr cur){
@@ -99,7 +100,7 @@
/* this is a parser of additional data in xml */
ts_vesicle *parseTrisurfTag(xmlDocPtr doc, xmlNodePtr cur){
- fprintf(stderr,"Parsing trisurf tag\n");
+ //fprintf(stderr,"Parsing trisurf tag\n");
xmlNodePtr child;
#ifdef COMPRESS
@@ -129,9 +130,9 @@
inflateInit(&infstream);
inflate(&infstream, Z_NO_FLUSH);
inflateEnd(&infstream);
- fprintf(stderr,"%lu\n",cLen);
+ //fprintf(stderr,"%lu\n",cLen);
subtree[infstream.total_out]='\0'; //zero terminate string
- fprintf(stderr,"%s\n",subtree);
+ //fprintf(stderr,"%s\n",subtree);
free(subtree);
#endif
@@ -221,7 +222,7 @@
for(i=0;i<3;i++) vtx[i]=strtok(NULL," ");
j++;
}
- fprintf(stderr,"Parsing triangles %s j=%d\n",triangles,j);
+ //fprintf(stderr,"Parsing triangles %s j=%d\n",triangles,j);
xmlFree(triangles);
return TS_SUCCESS;
@@ -245,7 +246,7 @@
j++;
for(i=0;i<3;i++) ntria[i]=strtok(NULL," ");
}
- fprintf(stderr,"Parsing triangle neighbors j=%d\n",j);
+ //fprintf(stderr,"Parsing triangle neighbors j=%d\n",j);
xmlFree(triangles);
return TS_SUCCESS;
@@ -315,7 +316,7 @@
}
child=child->next;
}
- fprintf(stderr,"Vertices position j=%d\n",idx);
+ //fprintf(stderr,"Vertices position j=%d\n",idx);
return TS_SUCCESS;
}
@@ -341,7 +342,7 @@
//find grafted vtx
if((vesicle->tape->nmono-1)==(idx-3*(vesicle->vlist->n-2))%(vesicle->tape->nmono)){
polyidx=(idx-3*(vesicle->vlist->n-2))/(vesicle->tape->nmono);
- fprintf(stderr,"poly=%d, vertex=%d\n",polyidx,atoi(token[0]));
+ //fprintf(stderr,"poly=%d, vertex=%d\n",polyidx,atoi(token[0]));
vesicle->poly_list->poly[polyidx]->grafted_vtx=vesicle->vlist->vtx[atoi(token[0])];
vesicle->vlist->vtx[atoi(token[0])]->grafted_poly=vesicle->poly_list->poly[polyidx];
}
@@ -355,7 +356,7 @@
xmlFree(conname);
child=child->next;
}
- fprintf(stderr,"Bond data j=%d\n",idx);
+ //fprintf(stderr,"Bond data j=%d\n",idx);
return TS_SUCCESS;
}
--
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