From b36841fb1903e9945cb4a1dbc4dd7761556e07e2 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Mon, 28 Apr 2014 10:40:08 +0000
Subject: [PATCH] Merge branch 'trout-rbc'

---
 src/energy.c |   14 ++++++++++++--
 1 files changed, 12 insertions(+), 2 deletions(-)

diff --git a/src/energy.c b/src/energy.c
index 4d93753..440f319 100644
--- a/src/energy.c
+++ b/src/energy.c
@@ -20,6 +20,14 @@
 }
 
 
+inline ts_bool bond_energy(ts_bond *bond,ts_poly *poly){
+//TODO: This value to be changed and implemented in data structure:
+	ts_double d_relaxed=1.0;
+	bond->energy=poly->k*pow(bond->bond_length-d_relaxed,2);
+	return TS_SUCCESS;
+};
+
+
 inline ts_bool energy_vertex(ts_vertex *vtx){
 //    ts_vertex *vtx=&vlist->vertex[n]-1; // Caution! 0 Indexed value!
 //    ts_triangle *tristar=vtx->tristar-1;
@@ -28,7 +36,7 @@
     ts_uint jjp,jjm;
     ts_vertex *j,*jp, *jm;
     ts_triangle *jt;
-    ts_double s=0,xh=0,yh=0,zh=0,txn=0,tyn=0,tzn=0;
+    ts_double s=0.0,xh=0.0,yh=0.0,zh=0.0,txn=0.0,tyn=0.0,tzn=0.0;
     ts_double x1,x2,x3,ctp,ctm,tot,xlen;
     ts_double h,ht;
     for(jj=1; jj<=vtx->neigh_no;jj++){
@@ -72,7 +80,9 @@
 #endif
         tot=ctp+ctm;
         tot=0.5*tot;
+
         xlen=vtx_distance_sq(j,vtx);
+/*
 #ifdef  TS_DOUBLE_DOUBLE 
         vtx->bond[jj-1]->bond_length=sqrt(xlen); 
 #endif
@@ -84,7 +94,7 @@
 #endif
 
         vtx->bond[jj-1]->bond_length_dual=tot*vtx->bond[jj-1]->bond_length;
-
+*/
         s+=tot*xlen;
         xh+=tot*(j->x - vtx->x);
         yh+=tot*(j->y - vtx->y);

--
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