From 3197854e89eb9ffe5ff3137e274d16806c2028a5 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 27 Jul 2021 12:51:09 +0000
Subject: [PATCH] Found one bug in the code when calculating mprod. Fixed.

---
 src/tape |   40 ++++++++++++++++++++++++++++++++--------
 1 files changed, 32 insertions(+), 8 deletions(-)

diff --git a/src/tape b/src/tape
index a7baa73..8de15ff 100644
--- a/src/tape
+++ b/src/tape
@@ -14,7 +14,7 @@
 # (pswitch=1: calc. p*dV energy contribution)
 pswitch = 0
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
-pressure=10.0
+pressure=10000.0
 
 #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
 constvolswitch=0
@@ -23,15 +23,20 @@
 #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
 constareaswitch=0
 
+
+#Stretching
+stretchswitch=0
+xkA0=1.0
+
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=800
+npoly=0
 # nmono is a number of monomers in each polymer
-nmono=6
+nmono=20
 # Spring constant between monomers of the polymer
 k_spring=800
 #set to 1 if half of the polymeres are inside the vesicle
-internal_poly=1
+internal_poly=0
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
@@ -48,9 +53,9 @@
 R_nucleusY=0
 R_nucleusZ=0
 #######  Cell definitions ############
-nxmax=60
-nymax=60
-nzmax=60
+nxmax=150
+nymax=150
+nzmax=150
 
 
 ####### Program Control ############
@@ -59,7 +64,7 @@
 mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 #2
-inititer=10
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
 #10000
 iterations=100
@@ -84,3 +89,22 @@
 #max number of processes in distributed (voluntary) environment
 distributed_processes=50
 #cuda options???
+
+
+#number of vertices with spontaneous curvature (integer)
+number_of_vertices_with_c0=0
+#c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float)
+c0=0.5
+#energy of attraction of vertices with spontaneous curvature (float, positive value for attraction)
+w=10.0
+#direct force on vesicles with spontaneous curvature (float)
+F=2.0
+
+
+
+#plane confinement
+plane_confinement_switch=0
+#final plane distance (float in lmin)
+plane_d=10
+#plane to vesicle repulsion force while closing
+plane_F=10

--
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