From a97daa5897994a0c02bae1602d58ec1f11ec2ce2 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 02 Sep 2014 20:33:06 +0000
Subject: [PATCH] Prsecmdline.c in test directory. This file is to show how command line parameters needs to be parsed.

---
 src/energy.c |    4 +++-
 1 files changed, 3 insertions(+), 1 deletions(-)

diff --git a/src/energy.c b/src/energy.c
index 1e37e08..440f319 100644
--- a/src/energy.c
+++ b/src/energy.c
@@ -21,7 +21,9 @@
 
 
 inline ts_bool bond_energy(ts_bond *bond,ts_poly *poly){
-	bond->energy=poly->k*pow(bond->bond_length-1,2);
+//TODO: This value to be changed and implemented in data structure:
+	ts_double d_relaxed=1.0;
+	bond->energy=poly->k*pow(bond->bond_length-d_relaxed,2);
 	return TS_SUCCESS;
 };
 

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