From a8e354c7fad70eb7fdfda62ec83faf1be6c4ed44 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 24 Jan 2023 20:03:01 +0000
Subject: [PATCH] Changes in code and README for easier compilation. May break something

---
 src/main.c |    7 +++++--
 1 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/main.c b/src/main.c
index c2e51af..5f8858f 100644
--- a/src/main.c
+++ b/src/main.c
@@ -17,7 +17,7 @@
 #include "shcomplex.h"
 #include "dumpstate.h"
 #include "restore.h"
-
+#include "globals.h"
 #include <fcntl.h>
 /** Entrance function to the program
   * @param argv is a number of parameters used in program call (including the program name
@@ -48,6 +48,7 @@
 		ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n");
 		ts_fprintf(stdout,"************************************************\n\n");
 		vesicle = parseDump(command_line_args.dump_from_vtk);
+//		write_vertex_xml_file(vesicle,9999); // here you can test if restoration and rewritting results in the same dump file. Only the date od creation of dump file must differ.
 		tape = vesicle->tape;
 		int arguments_no;
 		FILE *fd=fopen(".status","r");
@@ -126,10 +127,12 @@
 		}
 	}
 			//printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]);
+//	write_vertex_xml_file(vesicle,0);
+//	exit(1);
 
+			//write_vertex_xml_file(vesicle,1000);
 	run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
 	write_master_xml_file(command_line_args.output_fullfilename);
-	write_dout_fcompat_file(vesicle,"dout");
 	vesicle_free(vesicle);
 	tape_free(tape);
 	return 0; //program finished perfectly ok. We return 0.

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