From a7fb2b94260897ec914f0bbf31698e166263036c Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Mon, 13 Apr 2020 12:15:39 +0000
Subject: [PATCH] Removed some old non-essential files

---
 src/io.c |   25 ++++++-------------------
 1 files changed, 6 insertions(+), 19 deletions(-)

diff --git a/src/io.c b/src/io.c
index 30bd4d6..8fa652c 100644
--- a/src/io.c
+++ b/src/io.c
@@ -424,7 +424,8 @@
     vesicle->tape=parsetape(command_line_args.tape_fullfilename);
 // recreating space for cells // 
     vesicle->clist=init_cell_list(vesicle->tape->ncxmax, vesicle->tape->ncymax, vesicle->tape->nczmax, vesicle->tape->stepsize);
-	vesicle->clist->max_occupancy=16;
+//THIS IS HARDCODED IN CELL.C NOW
+//	vesicle->clist->max_occupancy=16;
 //    vesicle->tape=(ts_tape *)malloc(sizeof(ts_tape));
 //    retval=fread(vesicle->tape, sizeof(ts_tape),1,fh);
 	retval=fread(iteration,sizeof(ts_uint),1,fh);
@@ -750,22 +751,6 @@
 }
 
 
-ts_bool write_dout_fcompat_file(ts_vesicle *vesicle, ts_char *filename){
-	FILE *fh;
-	fh=fopen(filename, "w");
-    if(fh==NULL){
-        err("Cannot open file %s for writing");
-        return TS_FAIL;
-    }
-    fprintf(fh,"%.17E\n%.17E\n",vesicle->stepsize,vesicle->dmax);
-    fprint_vertex_list(fh,vesicle->vlist);
-    fprint_tristar(fh,vesicle);
-    fprint_triangle_list(fh,vesicle);
-    fprint_vertex_data(fh,vesicle->vlist);
-    fprint_bonds(fh,vesicle);
-	fclose(fh);	
-	return TS_SUCCESS;
-}
 
 ts_bool read_tape_fcompat_file(ts_vesicle *vesicle, ts_char *filename){
 	FILE *fh;
@@ -845,7 +830,8 @@
 	ts_uint monono=0, polyno=0, poly_idx=0, filno=0, fonono=0;
 	ts_bool poly=0, fil=0;
 	if(vesicle->poly_list!=NULL){
-		if(vesicle->poly_list->poly[0]!=NULL){
+		if(vesicle->poly_list->n!=0){
+		//if(vesicle->poly_list->poly[0]!=NULL){
 		polyno=vesicle->poly_list->n;
 		monono=vesicle->poly_list->poly[0]->vlist->n;
 		poly=1;
@@ -853,7 +839,8 @@
 	}
 
 	if(vesicle->filament_list!=NULL){
-		if(vesicle->filament_list->poly[0]!=NULL){
+		if(vesicle->filament_list->n!=0){
+		//if(vesicle->filament_list->poly[0]!=NULL){
 		filno=vesicle->filament_list->n;
 		fonono=vesicle->filament_list->poly[0]->vlist->n;
 		fil=1;

--
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