From a69203a95d66595b80891aafc1ca8a59303290d0 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 18 Oct 2019 09:16:27 +0000
Subject: [PATCH] Debugged all the leaks. Decompression still not working
---
src/io.h | 95 +++++++----------------------------------------
1 files changed, 15 insertions(+), 80 deletions(-)
diff --git a/src/io.h b/src/io.h
index 699c73e..16bacfb 100644
--- a/src/io.h
+++ b/src/io.h
@@ -1,43 +1,14 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
#ifndef _IO_H
#define _IO_H
-
+#include <confuse.h>
/** @ Global variables for I/O operations like filenames etc. */
/*static char mastername[1024];
static char prefixname[1024];
static ts_bool restore=0;
static char tape[1024]; */
int force_from_tape;
-
-
-typedef struct {
- long int nshell;
- long int ncxmax;
- long int ncymax;
- long int nczmax;
- long int npoly;
- long int nmono;
- long int nfil;
- long int nfono;
- long int R_nucleus;
- long int pswitch;
- char *multiprocessing;
- long int brezveze0;
- long int brezveze1;
- long int brezveze2;
- ts_double xk0;
- ts_double dmax;
- ts_double dmin_interspecies;
- ts_double stepsize;
- ts_double kspring;
- ts_double xi;
- ts_double pressure;
- long int iterations;
- long int inititer;
- long int mcsweeps;
- long int quiet;
- long int shc;
-} ts_tape;
-
+char tapetxt[128000]; //stores text file of the tape
typedef struct{
ts_int force_from_tape;
ts_int reset_iteration_count;
@@ -45,6 +16,9 @@
char output_fullfilename[1024]; //name of the master file
char dump_fullfilename[1024]; //name of the dump file
char tape_fullfilename[1024]; //name of the tape file
+ char tape_templatefull[1024]; //name of the tape template file
+ char tape_opts[1000]; //commandline tape options
+ char dump_from_vtk[1024];
} ts_args;
ts_args command_line_args;
@@ -53,58 +27,19 @@
-/** @brief Prints the position of vertices for the whole list
- *
- * The function is meant more or less as a debug tool, but can be used in production
- * environment aswell.
- * the output is in form of idx: x y z
- * @param *vlist is a structure holding information on vertex list.
- * @returns TS_SUCCESS on successful execution, TS_FAIL otherwise.
-*/
-
-ts_bool print_vertex_list(ts_vertex_list *vlist);
-
-/** @brief Prints the neighbours of all the vertices
- *
- * The function is meant more or less as a debug tool, but can be used in production
- * environment aswell.
- * the output is in form of idx(number of neighbours): (x1,y1,z1) (x2,y2,z2) ...
- * @param *vlist is a structure holding information on vertex list.
- * @returns TS_SUCCESS on successful execution, TS_FAIL otherwise.
-*/
-ts_bool print_vertex_neighbours(ts_vertex_list *vlist);
-
-
-/** @brief Function outputs the vetex list file to comply to old fortran format
- *
- * @param *vlist is a list of vertices
- * @param *filename is a name of the output file to be created (note that if the file already
- * exists it will be overwritten.
- */
-ts_bool write_vertex_fcompat_file(ts_vertex_list *vlist,ts_char *filename);
-ts_bool fprint_vertex_list(FILE *fh,ts_vertex_list *vlist);
-ts_bool fprint_tristar(FILE *fh, ts_vesicle *vesicle);
-ts_bool fprint_triangle_list(FILE *fh, ts_vesicle *vesicle);
-ts_bool fprint_vertex_data(FILE *fh,ts_vertex_list *vlist);
-ts_bool fprint_bonds(FILE *fh,ts_vesicle *vesicle);
-ts_bool write_dout_fcompat_file(ts_vesicle *vesicle, ts_char *filename);
-ts_bool read_tape_fcompat_file(ts_vesicle *vesicle, ts_char *filename);
-
-
-/** @brief Outputs file in vtk format, compatible with paraview.
+/** @brief Outputs file in newer vtk xml format, compatible with paraview.
*
- * @param *vlist is a list of vertices
- * @param *filename is a name of the output file. If exists, it will be overwritten
- * @param *text is a description line (max. 255 characters) to be included in the file
+ * @param *vesicle is a list of vertices
+ * @param *timestepno is a timestep number. Output file will be timestep_XXXXXX.vtu
+ * @param *cstlist TO BE DOCUMENTED
*/
-ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
-ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
-ts_bool write_master_xml_file(ts_char *filename);
+ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno, ts_cluster_list *cstlist);
ts_bool write_pov_file(ts_vesicle *vesicle, char *filename);
ts_tape *parsetape(char *filename);
+ts_tape *parsetapebuffer(char *buffer);
ts_bool tape_free(ts_tape *tape);
-
-ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
-ts_vesicle *restore_state(ts_uint *iteration);
+ts_bool getcmdline_tape(cfg_t *cfg, char *opts);
+ts_bool cmdline_to_tape(cfg_t *cfg, char *key, char *val);
+ts_bool print_help(FILE *fd);
#endif
--
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