From a18ed8730a0bf9cf49db1869bb82b274969adebe Mon Sep 17 00:00:00 2001
From: Miha <mihaf@hapi.(none)>
Date: Wed, 12 Feb 2014 15:11:31 +0000
Subject: [PATCH] Bug if(cell_occupation>1) in cell.c found and removed! Hura!!!!

---
 src/main.c |   39 +++++++++++++++++++++------------------
 1 files changed, 21 insertions(+), 18 deletions(-)

diff --git a/src/main.c b/src/main.c
index e4e1027..53f4b0e 100644
--- a/src/main.c
+++ b/src/main.c
@@ -10,6 +10,7 @@
 #include "initial_distribution.h"
 #include "frame.h"
 #include "timestep.h"
+#include "poly.h"
 
 /** Entrance function to the program
   * @param argv is a number of parameters used in program call (including the program name
@@ -18,38 +19,40 @@
 */
 
 int main(int argv, char *argc[]){
+ts_uint inititer,mcsweeps, iterations;
+ts_vesicle *vesicle;
+/* THIS SHOULD GO INTO UNIT TEST
 ts_bool retval;
-ts_uint i;
     ts_vertex_list *vlist=init_vertex_list(5);
 ts_vertex_list *vlist1;
 ts_bond_list *blist=init_bond_list();
 ts_triangle_list *tlist=init_triangle_list();
 ts_cell_list *clist=init_cell_list(3,3,3,0.3);
-ts_vesicle *vesicle;
 
 retval=vtx_add_cneighbour(blist,vlist->vtx[1],vlist->vtx[0]);
 if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n");
 
-retval=vtx_add_cneighbour(blist,vlist->vtx[0],vlist->vtx[1]);
+retval=vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
 if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");
-
-retval=vtx_remove_neighbour(vlist->vtx[0],vlist->vtx[1]);
+fprintf(stderr,"Was here");
+retval=vtx_remove_neighbour(vlist->vtx[1],vlist->vtx[0]);
 vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
+fprintf(stderr,"Was here too!\n");
 
-vlist->vtx[0]->data->x=1.0;
-vlist->vtx[0]->data->x=1.1;
+vlist->vtx[0]->x=1.0;
+vlist->vtx[0]->x=1.1;
 vlist1=vertex_list_copy(vlist);
 bond_add(blist, vlist->vtx[1],vlist->vtx[0]);
 triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
 
 triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
 
-printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
 cell_add_vertex(clist->cell[0], vlist->vtx[0]);
-printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex);
-printf("Cell idx=1 has vertex[0] has x coordinate=%e\n",clist->cell[0]->data->vertex[0]->data->x);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
+printf("Cell idx=1 has vertex[0] has x coordinate=%e\n",clist->cell[0]->vertex[0]->x);
 cell_list_cell_occupation_clear(clist);
-printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
 cell_add_vertex(clist->cell[0], vlist->vtx[0]);
 
 
@@ -60,17 +63,17 @@
 
 vtx_list_free(vlist1);
 printf("Tests complete.\n");
-vesicle=initial_distribution_dipyramid(17,60,60,60,0.15);
+*/
+vesicle=parsetape(&mcsweeps, &inititer, &iterations);
 
-centermass(vesicle);
-cell_occupation(vesicle);
+/*Testing */
+//vesicle->poly_list=init_poly_list(1400,20,vesicle->vlist);
 
-for(i=0;i<100;i++)
-single_timestep(vesicle);
+//poly_list_free(vesicle->poly_list);
+/*End testing*/
 
+run_simulation(vesicle, mcsweeps, inititer, iterations);
 
-
-write_vertex_xml_file(vesicle,0);
 write_master_xml_file("test.pvd");
 write_dout_fcompat_file(vesicle,"dout");
 vesicle_free(vesicle);

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